Browse Element(s) Details


Os.14965.1.S1_at

Description gb:BI811805
DB_XREF= gi:16577710
DB_XREF=A007E08
CLONE=A007E08
TID=Os.14965.1
CNT=17
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.14965 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_563831.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0275410/11Amidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02700Os.31312.5.S1_x_at4/114+1016884..1020185retrotransposon protein, putative, unclassified
LOC_Os04g02700Os.31312.2.S1_x_at2/114+1016884..1020185retrotransposon protein, putative, unclassified
LOC_Os04g02710OsAffx.22492.1.S1_at1/114+1020814..1026969retrotransposon protein, putative, unclassified
LOC_Os04g02710OsAffx.22492.1.S1_x_at1/114+1020814..1026969retrotransposon protein, putative, unclassified
LOC_Os04g02720OsAffx.15422.1.S1_at11/114+1029779..1032035cation channel family protein
LOC_Os04g02720OsAffx.15422.2.S1_at1/114+1029779..1032035cation channel family protein
LOC_Os04g02730Os.7618.1.S1_at11/114+1033994..1041090dihydrouridine synthase family protein, putative, expressed
LOC_Os04g02730OsAffx.8934.1.S1_x_at1/114+1033994..1041090dihydrouridine synthase family protein, putative, expressed
LOC_Os04g02754Os.14965.1.S1_at10/114+1041720..1058003Amidase family protein, expressed
LOC_Os04g02780Os.9698.1.S1_at11/114+1060492..1063545amidase family protein, putative, expressed
LOC_Os04g02790NANA4+1071751..1072062hypothetical protein
LOC_Os04g02800NANA4+1074546..1075067retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02810Os.49936.2.A1_at3/114+1076540..1077881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02810Os.33601.3.S1_x_at1/114+1076540..1077881retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02820Os.28160.1.S1_at11/114+1080525..1085753Elongation factor 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004040molecular_functionamidase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14965.1.S1_at--1146--1191Chr04:1057513..1057537 (25 bp)
AGTTTCGCTGGTGGCACGACATGGC
LOC_Os04g02754
Os.14965.1.S1_at--411--7731Chr04:1057522..1057546 (25 bp)
GGTGGCACGACATGGCGCAGACCAT
LOC_Os04g02754
Os.14965.1.S1_at--910--3851Chr04:1057563..1057587 (25 bp)
CTGAGGAGCTGTACCAGACGCTCAT
LOC_Os04g02754
Os.14965.1.S1_at--61--1851Chr04:1057580..1057604 (25 bp)
ACGCTCATAGACGAAGCCGCTAAAG
LOC_Os04g02754
Os.14965.1.S1_at--965--9211Chr04:1057623..1057647 (25 bp)
TCCAGCCCGATTTCATCTGTATATA
LOC_Os04g02754
Os.14965.1.S1_at--1028--7151Chr04:1057662..1057686 (25 bp)
GTCTAAACACGTATTATATTGCATA
LOC_Os04g02754
Os.14965.1.S1_at--753--7751Chr04:1057706..1057730 (25 bp)
GGTGATACAATCCACCCAATGTAAA
LOC_Os04g02754
Os.14965.1.S1_at--154--9211Chr04:1057716..1057740 (25 bp)
TCCACCCAATGTAAACTTGCATATG
LOC_Os04g02754
Os.14965.1.S1_at--713--671Chr04:1057750..1057774 (25 bp)
ATGAACTAGCTGATACCTCGCACTT
LOC_Os04g02754
Os.14965.1.S1_at--371--6271Chr04:1057932..1057956 (25 bp)
GATGTGACACACTTGCACGTTAAGT
LOC_Os04g02754
Os.14965.1.S1_at--674--6511NONE
GATATATGTGTTTGCACTCCACAGA
NONE
Target Sequence 
AGTTTCGCTGGTGGCACGACATGGCGCAGACCATTTCCTCCTCAATGTGGCTGAGGAGCTGTACCAGACGCTCATAGACG
AAGCCGCTAAAGCTTGGGCCTCCTGAATCCTCCAGCCCGATTTCATCTGTATATACCTACTAATACNAAGTCTAAACACG
TATTATATTGCATATATGGAATAATGGAAATGGGGTGATACAATCCACCCAATGTAAACTTGCATATGCATATATACATG
AACTAGCTGATACCTCGCACTTTGCTGCGAAATACGTGGATGAATGTATGTTATACATNAGATAAATGTATATGTTTAAA
TAATGTGAAAATGATGTGGAAATTAAAATACTCCACATAATAGTTGNTAGTGAGTCATGTAATTTAAAATACTTTAGATA
ATAATTGCTAGTGGGTGATGATGTGACACACTTGCACGTTAAGTTTTAGAAGTTTGGGTGTATGAAAATATAGATATATG
TGTTTGCACTCCACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis