Browse Element(s) Details

OsAffx.15422.2.S1_at

Description

tigr:9634.m01428
TID=OsAffx.15422.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cation channel family protein, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g14310	11/11	cation channel family protein
LOC_Os04g02720	1/11	cation channel family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g14270	OsAffx.27632.1.S1_at	11/11	6	+	7959790..7960936	hypothetical protein
LOC_Os06g14280	OsAffx.27633.1.S1_at	11/11	6	+	7962962..7966745	33 kDa secretory protein, putative, expressed
LOC_Os06g14290	Os.35344.18.S1_x_at	10/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14290	Os.35344.3.S1_x_at	9/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14290	OsAffx.22940.5.S1_x_at	3/11	6	+	7971114..7976885	transposon protein, putative, Mutator sub-class
LOC_Os06g14300	NA	NA	6	+	7978497..7980136	transposon protein, putative, unclassified
LOC_Os06g14310	OsAffx.15422.2.S1_at	11/11	6	+	7981085..7982860	cation channel family protein
LOC_Os06g14324	Os.10311.1.S1_a_at	11/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_s_at	10/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.10311.2.A1_x_at	9/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	Os.24876.1.S1_s_at	5/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.14652.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14324	OsAffx.27197.1.S1_at	1/11	6	+	7982957..7989957	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14340	OsAffx.15423.1.S1_at	11/11	6	+	7991023..7991745	hypothetical protein
LOC_Os06g14350	Os.24876.1.S1_at	11/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.24876.1.S1_s_at	10/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.10311.2.A1_s_at	10/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed
LOC_Os06g14350	Os.10311.2.A1_x_at	1/11	6	+	7995913..8003843	Calcium binding EF-hand protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006813	biological_process	potassium ion transport
GO:0005886	cellular_component	plasma membrane
GO:0005242	molecular_function	inward rectifier potassium channel activity
GO:0030551	molecular_function	cyclic nucleotide binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15422.2.S1_at--177--621	2	Chr06:7982267..7982291 (25 bp)	GAGGCATTGACAACCCTTGCAGATG	LOC_Os06g14310
OsAffx.15422.2.S1_at--209--1041	1	Chr06:7982527..7982551 (25 bp)	TTTTGTCAGCGATCATCTTTGGAAT	LOC_Os06g14310
OsAffx.15422.2.S1_at--170--325	2	Chr06:7982577..7982601 (25 bp)	CAACCGAGGTTGCTGTAGATGAATC	LOC_Os06g14310
OsAffx.15422.2.S1_at--831--693	2	Chr06:7982591..7982615 (25 bp)	GTAGATGAATCAAAAGAGGCCGCTC	LOC_Os06g14310
OsAffx.15422.2.S1_at--850--621	1	Chr06:7982606..7982630 (25 bp)	GAGGCCGCTCACAAAATGTTACCAT	LOC_Os06g14310
OsAffx.15422.2.S1_at--397--1041	1	Chr06:7982652..7982676 (25 bp)	TTATTCATGAGCAACTTCCCAACGC	LOC_Os06g14310
OsAffx.15422.2.S1_at--986--259	1	Chr06:7982672..7982696 (25 bp)	AACGCGACTAGCACAGCACTGCATC	LOC_Os06g14310
OsAffx.15422.2.S1_at--529--269	2	Chr06:7982708..7982732 (25 bp)	AAGCTCGTCTTACTCCCAGATTCGA	LOC_Os06g14310
OsAffx.15422.2.S1_at--1010--417	2	Chr06:7982722..7982746 (25 bp)	CCCAGATTCGATGCAAGAACTGATG	LOC_Os06g14310
OsAffx.15422.2.S1_at--789--527	1	Chr06:7982770..7982794 (25 bp)	GAAGGCCGTGAGAGGGATCCTCACT	LOC_Os06g14310
OsAffx.15422.2.S1_at--213--797	1	Chr06:7982784..7982808 (25 bp)	GGATCCTCACTGTGGAAGGAGCCGA	LOC_Os06g14310

Target Sequence

GAGGCATTGACAACCCTTGCAGATGGGACAGAGAAGCATGTGAAGAGAATAGGACCTCGGGGCATGGCAGGGGAAATCGG
GGTGATGTTCAGCATTCCGCAACCATTCACCATCCGGAGCAGGAGACTCACCCAGGTTGTCCGCATAAGCCATATCCATC
TGCTTCAGGCTGTCCGGCCTAACACCGCAGATGGGTACATCGTGTTCTCCAATTTTATTCAGTACCTTGAGTCTCTGAAG
GTGCAAACAAAGGATGTGGCTTTTGTCAGCGATCATCTTTGGAATGGAAACTCAATGGTTTTGAGAAGGGCAACCGAGGT
TGCTGTAGATGAATCAAAAGAGGCCGCTCACAAAATGTTACCATGCAAAGAACCCAAACGGGTTGTTATTCATGAGCAAC
TTCCCAACGCGACTAGCACAGCACTGCATCCTTCGCCGGGGAAGCTCGTCTTACTCCCAGATTCGATGCAAGAACTGATG
AAACTTTCAGAAAAGAAATTTGGGAAGGCCGTGAGAGGGATCCTCACTGTGGAAGGAGCCGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis