Browse Element(s) Details


OsAffx.27197.1.S1_at

Description tigr:9633.m03390
TID=OsAffx.27197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g363005/11expressed protein
LOC_Os06g143241/11Calcium binding EF-hand protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36240OsAffx.28294.3.S1_x_at11/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_x_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240Os.10038.1.S1_s_at1/115+21398937..21401641hypothetical protein
LOC_Os05g36250OsAffx.14983.1.S1_at11/115+21405209..21405721hypothetical protein
LOC_Os05g36260Os.50985.1.S1_at11/115+21408757..21410423Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os05g36270Os.25619.1.S1_at10/115+21410700..21413652Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os05g36280Os.10246.2.S1_at11/115+21416261..21416993Histone H3, putative, expressed
LOC_Os05g36290Os.11355.1.S1_at11/115+21417384..21421062Actin-1, putative, expressed
LOC_Os05g36300OsAffx.27197.1.S1_at5/115+21425089..21425355expressed protein
LOC_Os05g36310Os.55524.1.S1_at10/115+21426203..21427428Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g36320OsAffx.5118.1.S1_x_at3/115+21428656..21429066hypothetical protein
LOC_Os05g36330OsAffx.5136.1.S1_at4/115+21429425..21429628hypothetical protein
LOC_Os05g36340Os.52777.1.S1_s_at11/115+21431220..21432061expressed protein
LOC_Os05g36350OsAffx.4540.1.S1_at11/115+21434936..21436624pentatricopeptide, putative, expressed
LOC_Os05g36360Os.14854.1.S1_at11/115+21441985..21443573U-box domain containing protein, expressed
LOC_Os05g36370OsAffx.27198.1.S1_at11/115+21444128..21445585hypothetical protein
LOC_Os05g36380OsAffx.4541.1.S1_at11/115+21445897..21447031hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005509molecular_functioncalcium ion binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27197.1.S1_at--407--9651Chr05:21425297..21425321 (25 bp)
TCACCTTTGCGGTGGACAAAGGCGT
LOC_Os05g36300
OsAffx.27197.1.S1_at--599--4411Chr05:21425243..21425267 (25 bp)
GCCACCTCATCACTGGATGTTGTTG
LOC_Os05g36300
OsAffx.27197.1.S1_at--317--391Chr05:21425235..21425259 (25 bp)
ATCACTGGATGTTGTTGTGTCACCG
LOC_Os05g36300
OsAffx.27197.1.S1_at--408--3551Chr05:21425199..21425223 (25 bp)
CATCTCATCCTTGCGTTCGATTTGG
LOC_Os05g36300
OsAffx.27197.1.S1_at--847--4311Chr05:21425191..21425215 (25 bp)
CCTTGCGTTCGATTTGGTGAGGAAG
LOC_Os05g36300
OsAffx.27197.1.S1_at--63--1311Chr05:21425039..21425192 (25 bp)
AGATGGCGCTCGGTCGATTGGACAA
NONE
OsAffx.27197.1.S1_at--673--4131Chr05:21425033..21425186 (25 bp)
CGCTCGGTCGATTGGACAAGGTCAA
NONE
OsAffx.27197.1.S1_at--1085--5593Chr04:18067995..18068015 (21 bp)
GACAAGGTCAACAAGCCACATCAAC
NONE
OsAffx.27197.1.S1_at--72--32721Chr10:16144709..16144728 (20 bp)
CAAAACTATAGATGGCCAAATGGGC
NONE
OsAffx.27197.1.S1_at--178--1911Chr05:21424943..21424967 (25 bp)
ACGGCCTAGGCATGACCGGCCCTGG
NONE
OsAffx.27197.1.S1_at--885--3491Chr05:21424349..21424373 (25 bp)
CATGGCGGCAGCTACGGCTAGTGAC
NONE
Target Sequence 
TCACCTTTGCGGTGGACAAAGGCGTGGGATGGAGGTCCCCAGGCCCAGTGGTGCGCCACCTCATCACTGGATGTTGTTGT
GTCACCGCCTTGCACCTCCATCTCATCCTTGCGTTCGATTTGGTGAGGAAGATGGCGCTCGGTCGATTGGACAAGGTCAA
CAAGCCACATCAACAAAAAAATACCCTCAAAACTATAGATGGCCAAATGGGCCATCCACCCCAGCACGGCCTAGGCATGA
CCGGCCCTGGGATGAGGACGCGTGGCGGCGTGCGGGGGAGGACGTGGGCACGCGGCGGCGGCGGTGGGCAGGCGGTGGCG
GCGACGCCGGGGAGGACGTGGCGGGCGGGCAGTGGCGGCAGGCCAGGGAGGACGCGGAGGCGGCGGCGGGTGACGTGGAT
GGAGCGCATGGCGGCAGCTACGGCTAGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis