Browse Element(s) Details


Os.10246.2.S1_at

Description gb:AK120955.1
DB_XREF= gi:37990578
TID=Os.10246.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H3 (P0505D12.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039F20, full insert sequence.
FL= gb:AK120955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3628011/11Histone H3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36210OsAffx.16109.1.S1_at11/115+21390828..21391733hypothetical protein
LOC_Os05g36220OsAffx.24383.1.S1_at3/115+21391977..21394211transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36230OsAffx.24188.1.S1_x_at1/115+21396048..21398667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36230OsAffx.24188.1.S1_at1/115+21396048..21398667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36240OsAffx.28294.3.S1_x_at11/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_x_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240Os.10038.1.S1_s_at1/115+21398937..21401641hypothetical protein
LOC_Os05g36250OsAffx.14983.1.S1_at11/115+21405209..21405721hypothetical protein
LOC_Os05g36260Os.50985.1.S1_at11/115+21408757..21410423Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os05g36270Os.25619.1.S1_at10/115+21410700..21413652Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os05g36280Os.10246.2.S1_at11/115+21416261..21416993Histone H3, putative, expressed
LOC_Os05g36290Os.11355.1.S1_at11/115+21417384..21421062Actin-1, putative, expressed
LOC_Os05g36300OsAffx.27197.1.S1_at5/115+21425089..21425355expressed protein
LOC_Os05g36310Os.55524.1.S1_at10/115+21426203..21427428Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g36320OsAffx.5118.1.S1_x_at3/115+21428656..21429066hypothetical protein
LOC_Os05g36330OsAffx.5136.1.S1_at4/115+21429425..21429628hypothetical protein
LOC_Os05g36340Os.52777.1.S1_s_at11/115+21431220..21432061expressed protein
LOC_Os05g36350OsAffx.4540.1.S1_at11/115+21434936..21436624pentatricopeptide, putative, expressed
LOC_Os05g36360Os.14854.1.S1_at11/115+21441985..21443573U-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10246.2.S1_at--690--1331Chr05:21416485..21416509 (25 bp)
AGAGGGCGTAGAATGCCTCCGTTGC
LOC_Os05g36280
Os.10246.2.S1_at--39--4631Chr05:21416480..21416504 (25 bp)
GCGTAGAATGCCTCCGTTGCCAGAT
LOC_Os05g36280
Os.10246.2.S1_at--97--3811Chr05:21416469..21416493 (25 bp)
CTCCGTTGCCAGATCTGGAGTTGTA
LOC_Os05g36280
Os.10246.2.S1_at--829--9191Chr05:21416463..21416487 (25 bp)
TGCCAGATCTGGAGTTGTAGAGTTA
LOC_Os05g36280
Os.10246.2.S1_at--183--7431Chr05:21416382..21416406 (25 bp)
GTGTTATGCACCGTCTGATGTTACC
LOC_Os05g36280
Os.10246.2.S1_at--252--10131Chr05:21416378..21416402 (25 bp)
TATGCACCGTCTGATGTTACCATCT
LOC_Os05g36280
Os.10246.2.S1_at--799--7171Chr05:21416370..21416394 (25 bp)
GTCTGATGTTACCATCTCATTATCA
LOC_Os05g36280
Os.10246.2.S1_at--316--9831Chr05:21416297..21416321 (25 bp)
TAAAATGGTTCTGAGCAGGTCGCAC
LOC_Os05g36280
Os.10246.2.S1_at--1107--8891Chr05:21416286..21416310 (25 bp)
TGAGCAGGTCGCACTATCTGCGGTA
LOC_Os05g36280
Os.10246.2.S1_at--306--7791Chr05:21416280..21416304 (25 bp)
GGTCGCACTATCTGCGGTACTAATC
LOC_Os05g36280
Os.10246.2.S1_at--782--4651Chr05:21416267..21416291 (25 bp)
GCGGTACTAATCAGAAATGTTTATT
LOC_Os05g36280
Target Sequence 
AGAGGGCGTAGAATGCCTCCGTTGCCAGATCTGGAGTTGTAGAGTTAGATCANGNNNTNNCNNNTTTNNTTTNANCNNNN
NTNCNTNNNNNNNNNGNNNTNNTNGTGTTATGCACCGTCTGATGTTACCATCTCATTATCATCAGCANNGNAAANNNTNN
TNNNCNNNNNCTCTAATTTTTGTTCTTAGTAAAATGGTTCTGAGCAGGTCGCACTATCTGCGGTACTAATCAGAAATGTT
TATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10246.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis