Browse Element(s) Details


Os.11355.1.S1_at

Description gb:AU075363
DB_XREF= gi:5055984
DB_XREF=AU075363
CLONE=C11282_12Z
TID=Os.11355.1
CNT=48
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.11355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104C20, full insert sequence
FL= gb:AK071586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3629011/11Actin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36220OsAffx.24383.1.S1_at3/115+21391977..21394211transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36230OsAffx.24188.1.S1_x_at1/115+21396048..21398667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36230OsAffx.24188.1.S1_at1/115+21396048..21398667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36240OsAffx.28294.3.S1_x_at11/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_x_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240Os.10038.1.S1_s_at1/115+21398937..21401641hypothetical protein
LOC_Os05g36250OsAffx.14983.1.S1_at11/115+21405209..21405721hypothetical protein
LOC_Os05g36260Os.50985.1.S1_at11/115+21408757..21410423Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os05g36270Os.25619.1.S1_at10/115+21410700..21413652Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os05g36280Os.10246.2.S1_at11/115+21416261..21416993Histone H3, putative, expressed
LOC_Os05g36290Os.11355.1.S1_at11/115+21417384..21421062Actin-1, putative, expressed
LOC_Os05g36300OsAffx.27197.1.S1_at5/115+21425089..21425355expressed protein
LOC_Os05g36310Os.55524.1.S1_at10/115+21426203..21427428Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g36320OsAffx.5118.1.S1_x_at3/115+21428656..21429066hypothetical protein
LOC_Os05g36330OsAffx.5136.1.S1_at4/115+21429425..21429628hypothetical protein
LOC_Os05g36340Os.52777.1.S1_s_at11/115+21431220..21432061expressed protein
LOC_Os05g36350OsAffx.4540.1.S1_at11/115+21434936..21436624pentatricopeptide, putative, expressed
LOC_Os05g36360Os.14854.1.S1_at11/115+21441985..21443573U-box domain containing protein, expressed
LOC_Os05g36370OsAffx.27198.1.S1_at11/115+21444128..21445585hypothetical protein
LOC_Os05g36380OsAffx.4541.1.S1_at11/115+21445897..21447031hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009845biological_processseed germination
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0048364biological_processroot development
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11355.1.S1_at--897--1331Chr05:21418581..21418605 (25 bp)
AGAAAGAAAATACAGCGTCTGGATT
LOC_Os05g36290
Os.11355.1.S1_at--484--7731Chr05:21418556..21418580 (25 bp)
GGTGGTTCTATTTTGGCTTCTCTTA
LOC_Os05g36290
Os.11355.1.S1_at--730--10211Chr05:21418548..21418572 (25 bp)
TATTTTGGCTTCTCTTAGCACTTTC
LOC_Os05g36290
Os.11355.1.S1_at--385--10871Chr05:21418544..21418568 (25 bp)
TTGGCTTCTCTTAGCACTTTCCAGC
LOC_Os05g36290
Os.11355.1.S1_at--420--5331Chr05:21417925..21417949 (25 bp)
GAAGTGCTTCTGAGCTTCTTGCCAA
LOC_Os05g36290
Os.11355.1.S1_at--414--4891Chr05:21417920..21417944 (25 bp)
GCTTCTGAGCTTCTTGCCAAGTTTG
LOC_Os05g36290
Os.11355.1.S1_at--961--10191Chr05:21417821..21417845 (25 bp)
TATATACTTGTACTCTGATAGTTGA
LOC_Os05g36290
Os.11355.1.S1_at--381--1891Chr05:21417752..21417776 (25 bp)
ACGTTGAGACTATCTTACCATGAAG
LOC_Os05g36290
Os.11355.1.S1_at--354--5991Chr05:21417747..21417771 (25 bp)
GAGACTATCTTACCATGAAGAGAAA
LOC_Os05g36290
Os.11355.1.S1_at--10--1771Chr05:21417692..21417716 (25 bp)
ACCTGATGACCTGAAGATACATAAA
LOC_Os05g36290
Os.11355.1.S1_at--673--5831Chr05:21417685..21417709 (25 bp)
GACCTGAAGATACATAAACTTGAGC
LOC_Os05g36290
Target Sequence 
AGAAAGAAAATACAGCGTCTGGATTGGTGGTTCTATTTTGGCTTCTCTTAGCACTTTCCAGCAGATGTGGATCTCCAAGG
GCGAGTATGATGAATCTGGTCCTGGCATTGTCCATATGAAGTGCTTCTGAGCTTCTTGCCAAGTTTGTAGAGCGGTATTT
CAAGATGTCGAGAAATCTCAGTTGGTTTATGTATACAAGGAGACCTGCTTTTGCAGATAAATATATACTTGTACTCTGAT
AGTTGAGATATGCTTTTAGCGTTGGGCATGGCAAACCAGGATTCCTCAGAACGTTGAGACTATCTTACCATGAAGAGAAA
GAGGGGCCCAGGAAAAGAAACAAAAAAAACACCTGATGACCTGAAGATACATAAACTTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis