Browse Element(s) Details


OsAffx.4540.1.S1_at

Description tigr:9633.m03395
TID=OsAffx.4540.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3635011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36260Os.50985.1.S1_at11/115+21408757..21410423Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os05g36270Os.25619.1.S1_at10/115+21410700..21413652Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os05g36280Os.10246.2.S1_at11/115+21416261..21416993Histone H3, putative, expressed
LOC_Os05g36290Os.11355.1.S1_at11/115+21417384..21421062Actin-1, putative, expressed
LOC_Os05g36300OsAffx.27197.1.S1_at5/115+21425089..21425355expressed protein
LOC_Os05g36310Os.55524.1.S1_at10/115+21426203..21427428Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g36320OsAffx.5118.1.S1_x_at3/115+21428656..21429066hypothetical protein
LOC_Os05g36330OsAffx.5136.1.S1_at4/115+21429425..21429628hypothetical protein
LOC_Os05g36340Os.52777.1.S1_s_at11/115+21431220..21432061expressed protein
LOC_Os05g36350OsAffx.4540.1.S1_at11/115+21434936..21436624pentatricopeptide, putative, expressed
LOC_Os05g36360Os.14854.1.S1_at11/115+21441985..21443573U-box domain containing protein, expressed
LOC_Os05g36370OsAffx.27198.1.S1_at11/115+21444128..21445585hypothetical protein
LOC_Os05g36380OsAffx.4541.1.S1_at11/115+21445897..21447031hypothetical protein
LOC_Os05g36390OsAffx.22848.3.S1_x_at2/115+21452268..21454435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g36400NANA5+21456602..21461339retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4540.1.S1_at--1149--10611Chr05:21435502..21435526 (25 bp)
TTCGTCGGGCTCTTGTCAGCCTGCT
LOC_Os05g36350
OsAffx.4540.1.S1_at--362--3791Chr05:21435466..21435490 (25 bp)
CTCGTCGACGAAGGGCTGAGCCACT
LOC_Os05g36350
OsAffx.4540.1.S1_at--784--1991Chr05:21435444..21435468 (25 bp)
ACTTCGACCGGATGAACGACGTCTA
LOC_Os05g36350
OsAffx.4540.1.S1_at--1012--2051Chr05:21435339..21435363 (25 bp)
ACTTGGTGCGCGACATGCCGGTGCC
LOC_Os05g36350
OsAffx.4540.1.S1_at--1007--1851Chr05:21435210..21435234 (25 bp)
ACGACGTGGGCAACCTCGTCATGCT
LOC_Os05g36350
OsAffx.4540.1.S1_at--407--7131Chr05:21435193..21435217 (25 bp)
GTCATGCTGGCCAACGTGTACGCCG
LOC_Os05g36350
OsAffx.4540.1.S1_at--1130--4251Chr05:21435051..21435075 (25 bp)
CCGGAGAGGGTCTGAGCTCTGAACT
LOC_Os05g36350
OsAffx.4540.1.S1_at--1067--1571Chr05:21435037..21435061 (25 bp)
AGCTCTGAACTTGGAGGCCTTGCTG
LOC_Os05g36350
OsAffx.4540.1.S1_at--614--8431Chr05:21435022..21435046 (25 bp)
GGCCTTGCTGGCGTTTTGGACATCT
LOC_Os05g36350
OsAffx.4540.1.S1_at--46--4651Chr05:21435012..21435036 (25 bp)
GCGTTTTGGACATCTTGGCCTCTCA
LOC_Os05g36350
OsAffx.4540.1.S1_at--1--6171Chr05:21434971..21434995 (25 bp)
GAGGATATAGATTTCGCTGATTCGG
LOC_Os05g36350
Target Sequence 
TTCGTCGGGCTCTTGTCAGCCTGCTCCTACGCCGGGCTCGTCGACGAAGGGCTGAGCCACTTCGACCGGATGAACGACGT
CTACGGCGTCGAGCCCGGCGTCGAGCACTACGGCTGCGTCGTCGACCTCCTCGGCCGGTCGGGACAAATCCGGCGCGCGC
TGGACTTGGTGCGCGACATGCCGGTGCCCGCCGACGCGAAGGTCTGGGGCTCGTTGCTCAGCGCGTGCCGGAGCCACGGC
GACGTCGACACGGCCGTGCTGGCCGCCGAGAGGCTGGTCGAGCTGGAGCCGGACGACGTGGGCAACCTCGTCATGCTGGC
CAACGTGTACGCCGCGGCGAGGCGGTGGAGCGACGTGGCGAGCACGAGGAAGGCGATACGGAGCAGGAGCATGAGGAAGA
CGCCGGGGTGCAGCCTGATCGAGGTGGGCAACGTGGTGAGGGAGTTCGTCGCCGGAGAGGGTCTGAGCTCTGAACTTGGA
GGCCTTGCTGGCGTTTTGGACATCTTGGCCTCTCACCTTGCAGACGACGAGGAGGATATAGATTTCGCTGATTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis