Browse Element(s) Details


OsAffx.4541.1.S1_at

Description tigr:9633.m03398
TID=OsAffx.4541.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3638011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36290Os.11355.1.S1_at11/115+21417384..21421062Actin-1, putative, expressed
LOC_Os05g36300OsAffx.27197.1.S1_at5/115+21425089..21425355expressed protein
LOC_Os05g36310Os.55524.1.S1_at10/115+21426203..21427428Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g36320OsAffx.5118.1.S1_x_at3/115+21428656..21429066hypothetical protein
LOC_Os05g36330OsAffx.5136.1.S1_at4/115+21429425..21429628hypothetical protein
LOC_Os05g36340Os.52777.1.S1_s_at11/115+21431220..21432061expressed protein
LOC_Os05g36350OsAffx.4540.1.S1_at11/115+21434936..21436624pentatricopeptide, putative, expressed
LOC_Os05g36360Os.14854.1.S1_at11/115+21441985..21443573U-box domain containing protein, expressed
LOC_Os05g36370OsAffx.27198.1.S1_at11/115+21444128..21445585hypothetical protein
LOC_Os05g36380OsAffx.4541.1.S1_at11/115+21445897..21447031hypothetical protein
LOC_Os05g36390OsAffx.22848.3.S1_x_at2/115+21452268..21454435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g36400NANA5+21456602..21461339retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4541.1.S1_at--317--951Chr05:21446311..21446335 (25 bp)
AGGACAGAGCCAACAAGATCCAGAG
LOC_Os05g36380
OsAffx.4541.1.S1_at--826--5591Chr05:21446265..21446289 (25 bp)
GAAATTGAGGCGGTCGGTGACCTCC
LOC_Os05g36380
OsAffx.4541.1.S1_at--649--8911Chr05:21446248..21446272 (25 bp)
TGACCTCCCGGTGACACGGTTCGAG
LOC_Os05g36380
OsAffx.4541.1.S1_at--519--1631Chr05:21446207..21446231 (25 bp)
AGCGACACGGATCGAGGTGGGACTT
LOC_Os05g36380
OsAffx.4541.1.S1_at--25--7771Chr05:21446161..21446185 (25 bp)
GGTGCAGATCCGGATAGGTGAGGTT
LOC_Os05g36380
OsAffx.4541.1.S1_at--1090--6151Chr05:21446142..21446166 (25 bp)
GAGGTTGGGATCGTCGTCACCGTCG
LOC_Os05g36380
OsAffx.4541.1.S1_at--579--7211Chr05:21446121..21446145 (25 bp)
GTCGTTCGCCAGTCTTCCTGGTACG
LOC_Os05g36380
OsAffx.4541.1.S1_at--729--4511Chr05:21445963..21445987 (25 bp)
GCCGCTCGTCCTGAAGTTGTCAGAG
LOC_Os05g36380
OsAffx.4541.1.S1_at--923--8991Chr05:21445952..21445976 (25 bp)
TGAAGTTGTCAGAGAGTTGCAGAAG
LOC_Os05g36380
OsAffx.4541.1.S1_at--750--5031Chr05:21445934..21445958 (25 bp)
GCAGAAGAACGTGTGTCCAAAGCAG
LOC_Os05g36380
OsAffx.4541.1.S1_at--98--2591Chr05:21445927..21445951 (25 bp)
AACGTGTGTCCAAAGCAGACTCCAC
LOC_Os05g36380
Target Sequence 
AGGACAGAGCCAACAAGATCCAGAGGAGGCAAAGATCGGGATGGGTGAAATTGAGGCGGTCGGTGACCTCCCGGTGACAC
GGTTCGAGGCGGCCGACGAGCTCCAGCGACACGGATCGAGGTGGGACTTGGCCGACAAGCTCCAAAAGGGGGTGCAGATC
CGGATAGGTGAGGTTGGGATCGTCGTCACCGTCGTTCGCCAGTCTTCCTGGTACGCCTGCCGTCTCCTGCTTACCTCCAT
GGCTCCGCCGCCACTCCTGGGCTCCTGCTCGAGCTCCCTGCAAAGGGGGTCGTGGTGGGAGGGGCGAGGCCACGACCTCC
ACAACACGGCTGCGTCGTTCTCCCACACGCCGCTCGTCCTGAAGTTGTCAGAGAGTTGCAGAAGAACGTGTGTCCAAAGC
AGACTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis