Browse Element(s) Details


Os.10038.1.S1_s_at

Description gb:AU082861
DB_XREF= gi:7212558
DB_XREF=AU082861
CLONE=C12816
TID=Os.10038.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.10038 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0584011/11expressed protein
LOC_Os11g417701/11hypothetical protein
LOC_Os05g362401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05780NANA7+2781567..2783807hypothetical protein
LOC_Os07g05790NANA7+2784882..2786723retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05800OsAffx.28293.1.S1_at10/117+2789750..2790857Lactoylglutathione lyase, putative, expressed
LOC_Os07g05810Os.8946.1.S1_at11/117+2792436..2795656expressed protein
LOC_Os07g05820Os.51287.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_x_at11/117+2795991..2799663expressed protein
LOC_Os07g05830OsAffx.5224.1.S1_at9/117+2800228..2802509ZIM motif family protein, expressed
LOC_Os07g05840OsAffx.28294.2.S1_x_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.2.S1_at11/117+2805240..2808129expressed protein
LOC_Os07g05840Os.10038.1.S1_s_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.3.S1_x_at8/117+2805240..2808129expressed protein
LOC_Os07g05850NANA7+2808505..2812192transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05860OsAffx.16109.1.S1_at11/117+2812436..2813389hypothetical protein
LOC_Os07g05870Os.57565.1.S1_at7/117+2817437..2821212expressed protein
LOC_Os07g05880Os.18840.1.S1_at11/117+2822624..2824937Kelch motif family protein, expressed
LOC_Os07g05890NANA7+2827967..2828317hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10038.1.S1_s_at--996--6573Chr05:21401143..21401167 (25 bp)
GATTGTTGTAACAGTTGGCCTTGTA
LOC_Os05g36240
Os.10038.1.S1_s_at--841--10012Chr05:21401629..21401653 (25 bp)
TAGCACATCTTGAATGCCTCTCCAT
NONE
Os.10038.1.S1_s_at--463--3753Chr05:21401664..21401688 (25 bp)
CTCACTTCACTAACAGATCATGCAA
NONE
Os.10038.1.S1_s_at--704--3313Chr05:21401671..21401695 (25 bp)
CACTAACAGATCATGCAAGATGGGC
NONE
Os.10038.1.S1_s_at--878--3214Chr12:18172758..18172820 (25 bp)
CAAGATGGGCTAAGGCTTTTGGATA
NONE
Os.10038.1.S1_s_at--326--4833Chr05:21401694..21401718 (25 bp)
GCTAAGGCTTTTGGATATACTGACT
NONE
Os.10038.1.S1_s_at--459--6633Chr05:21401724..21401748 (25 bp)
GTTGTGTCATACTAATACTTTTGGA
NONE
Os.10038.1.S1_s_at--519--9593Chr05:21401823..21401847 (25 bp)
TCTTGGCCATGCAAACTCCACAAAG
NONE
Os.10038.1.S1_s_at--749--7354Chr05:21401874..21401898 (25 bp)
GTGAACTGGAACTACATTATACTGT
NONE
Os.10038.1.S1_s_at--308--3593Chr05:21401888..21401912 (25 bp)
CATTATACTGTTATGAGGGATCTAT
NONE
Os.10038.1.S1_s_at--77--713Chr05:21401900..21401924 (25 bp)
ATGAGGGATCTATGTGTATCACTTG
NONE
Target Sequence 
GATTGTTGTAACAGTTGGCCTTGTAGTCNCATTCTCAAATAATTGAGATGGGAACAAGTTCTTCCCATGTAGTCTCACAG
CCAGTTGAGGACAATGGGAACAACANCAGTGATGGATGTAACACCGCCTCTGGCAATGGTGGCAATAACAACGGCGACAA
CAACTGCAATGGCAATAATACTAGCAGTTTGAATGCCAATGATGGAAGCAACATCGGTAGGAACAACAACTCTGGTGGTT
GTAATACTAGCACATCTTGAATGCCTCTCCATGATGCTNCCACTCACTTCACTAACAGATCATGCAAGATGGGCTAAGGC
TTTTGGATATACTGACTNTGGAGTTGTGTCATACTAATACTTTTGGATAGGTTGTATTTATGGTTCTANACCTCGATAGA
NTGTGGGACTCCAAAATTAGTANTAAGTTTCTTACATAGTNTCTTGGCCATGCAAACTCCACAAAGTGANACTTTTGTGT
TATGTTCAAATNGTGAACTGGAACTACATTATACTGTTATGAGGGATCTATGTGTATCACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10038.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis