Browse Element(s) Details


OsAffx.5224.1.S1_at

Description tigr:9635.m00521
TID=OsAffx.5224.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g058309/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05770OsAffx.22940.2.S1_s_at10/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_x_at9/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.18.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.2.S1_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.1.S1_s_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_at5/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.31552.2.S1_at1/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05780NANA7+2781567..2783807hypothetical protein
LOC_Os07g05790NANA7+2784882..2786723retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05800OsAffx.28293.1.S1_at10/117+2789750..2790857Lactoylglutathione lyase, putative, expressed
LOC_Os07g05810Os.8946.1.S1_at11/117+2792436..2795656expressed protein
LOC_Os07g05820Os.51287.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_x_at11/117+2795991..2799663expressed protein
LOC_Os07g05830OsAffx.5224.1.S1_at9/117+2800228..2802509ZIM motif family protein, expressed
LOC_Os07g05840OsAffx.28294.2.S1_x_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.2.S1_at11/117+2805240..2808129expressed protein
LOC_Os07g05840Os.10038.1.S1_s_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.3.S1_x_at8/117+2805240..2808129expressed protein
LOC_Os07g05850NANA7+2808505..2812192transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05860OsAffx.16109.1.S1_at11/117+2812436..2813389hypothetical protein
LOC_Os07g05870Os.57565.1.S1_at7/117+2817437..2821212expressed protein
LOC_Os07g05880Os.18840.1.S1_at11/117+2822624..2824937Kelch motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5224.1.S1_at--412--8111Chr07:2802183..2802207 (25 bp)
GGACGACAGTACAAGTGCTGACCCG
LOC_Os07g05830
OsAffx.5224.1.S1_at--184--1171Chr07:2802176..2802200 (25 bp)
AGTACAAGTGCTGACCCGGCGCCGG
LOC_Os07g05830
OsAffx.5224.1.S1_at--682--6211Chr07:2802137..2802161 (25 bp)
GAGGCGAGGAGGAACTTGACCATCT
LOC_Os07g05830
OsAffx.5224.1.S1_at--679--991Chr07:2802131..2802155 (25 bp)
AGGAGGAACTTGACCATCTTCTACA
LOC_Os07g05830
OsAffx.5224.1.S1_at--131--2211Chr07:2802109..2802133 (25 bp)
ACAACGGCCGGATGTGCGCCGTCAA
LOC_Os07g05830
OsAffx.5224.1.S1_at--216--2591NONE
AACGTCACCGAGCTACAGGCGAGGA
NONE
OsAffx.5224.1.S1_at--611--5911NONE
GAGCTACAGGCGAGGACGATCATAT
NONE
OsAffx.5224.1.S1_at--208--5771Chr07:2800570..2800594 (25 bp)
GACGATCATATCCATGGCGAGCCAA
LOC_Os07g05830
OsAffx.5224.1.S1_at--169--4391Chr07:2800549..2800573 (25 bp)
CCAAGGAAATTTCGGCAAGCAGCAG
LOC_Os07g05830
OsAffx.5224.1.S1_at--911--9851Chr07:2800514..2800538 (25 bp)
TACAGGGTAGGGACGATCACCACTA
LOC_Os07g05830
OsAffx.5224.1.S1_at--1035--6911Chr07:2800508..2800532 (25 bp)
GTAGGGACGATCACCACTACCACCA
LOC_Os07g05830
Target Sequence 
GGACGACAGTACAAGTGCTGACCCGGCGCCGGCGACGGTGGCGGCGGAGGCGAGGAGGAACTTGACCATCTTCTACAACG
GCCGGATGTGCGCCGTCAACGTCACCGAGCTACAGGCGAGGACGATCATATCCATGGCGAGCCAAGGAAATTTCGGCAAG
CAGCAGCAGCAGCAAATACAGGGTAGGGACGATCACCACTACCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis