Browse Element(s) Details


OsAffx.24188.1.S1_at

Description tigr:9630.m00984
TID=OsAffx.24188.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1061411/11expressed protein
LOC_Os02g165298/11hypothetical protein
LOC_Os05g362301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10560OsAffx.2566.1.S1_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.2566.1.S1_x_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.3289.2.A1_at1/112+5560274..5561053hypothetical protein
LOC_Os02g10570OsAffx.2567.1.S1_at11/112+5561298..5563775hypothetical protein
LOC_Os02g10570OsAffx.16205.1.S1_at1/112+5561298..5563775hypothetical protein
LOC_Os02g10580OsAffx.11976.1.S1_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10580OsAffx.11976.2.S1_s_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10590Os.52104.1.S1_at11/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_x_at2/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_at1/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10600OsAffx.11977.1.S1_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10600Os.28395.1.S1_x_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10614OsAffx.24188.1.S1_at11/112+5584279..5586144expressed protein
LOC_Os02g10614OsAffx.24188.1.S1_x_at11/112+5584279..5586144expressed protein
LOC_Os02g10630Os.16187.1.S1_at9/112+5586959..5593645C2 domain containing protein, expressed
LOC_Os02g10640Os.292.1.S1_a_at11/112+5595400..560085226S protease regulatory subunit S10B, putative, expressed
LOC_Os02g10650Os.18613.1.S1_at11/112+5604274..5609482polyphosphoinositide binding protein Ssh1p, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24188.1.S1_at--158--4171Chr02:5584362..5584386 (25 bp)
CGCCGTCGTCCTTGAGGCCGCTCGG
LOC_Os02g10614
OsAffx.24188.1.S1_at--58--4811Chr02:5584381..5584405 (25 bp)
GCTCGGCTCTCTAGCGTGCCATTCG
LOC_Os02g10614
OsAffx.24188.1.S1_at--600--4811Chr02:5584386..5584410 (25 bp)
GCTCTCTAGCGTGCCATTCGGGCGG
LOC_Os02g10614
OsAffx.24188.1.S1_at--1102--4572Chr02:5585887..5585911 (25 bp)
GCGCACCAAGCGCTCGACTTGAACG
LOC_Os02g10614
OsAffx.24188.1.S1_at--186--1712Chr02:5585891..5585915 (25 bp)
ACCAAGCGCTCGACTTGAACGCGTG
LOC_Os02g10614
OsAffx.24188.1.S1_at--678--2672Chr02:5585894..5585918 (25 bp)
AAGCGCTCGACTTGAACGCGTGCCA
LOC_Os02g10614
OsAffx.24188.1.S1_at--617--4132Chr02:5585897..5585921 (25 bp)
CGCTCGACTTGAACGCGTGCCACGG
LOC_Os02g10614
OsAffx.24188.1.S1_at--1120--4192Chr02:5586029..5586053 (25 bp)
CCCGCGGCGTCCAGCAGCTTGAGTG
LOC_Os02g10614
OsAffx.24188.1.S1_at--696--4652Chr02:5586035..5586059 (25 bp)
GCGTCCAGCAGCTTGAGTGGGCCCT
LOC_Os02g10614
OsAffx.24188.1.S1_at--473--3392Chr02:5586040..5586064 (25 bp)
CAGCAGCTTGAGTGGGCCCTCCAAC
LOC_Os02g10614
OsAffx.24188.1.S1_at--243--76513Chr11:27739317..27739635 (25 bp)
GGGAGAGAGATCGACGCCGGCCATG
NONE
Target Sequence 
CGCCGTCGTCCTTGAGGCCGCTCGGCTCTCTAGCGTGCCATTCGGGCGGCGGCGAGGTTGCCGGCGGTGGCGATGGCGAC
CAGGAACGGGGAAGGCGGCGCGCCTGGGGATGGGGAAAGCGCCGGCACGGACGGGGACGATGGTTCGGCTCGGCGGCGCG
GCGCACCAAGCGCTCGACTTGAACGCGTGCCACGGCGTCACCCCCTTCTCCGATGTGCTCCTCGACATGGGCAGCGACCT
GCTCGCAGCGGAGCTCCTTGTCGAGGCGACCTGCTCACGCGCGCAGCCGCAGCCAGCTCAACCCCGCGGCGTCCAGCAGC
TTGAGTGGGCCCTCCAACCTCGCCGGGGAGAGAGATCGACGCCGGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis