Browse Element(s) Details


Os.52104.1.S1_at

Description gb:AK064726.1
DB_XREF= gi:32974744
TID=Os.52104.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-H03, full insert sequence.
FL= gb:AK064726.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1059011/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10530Os.54540.1.S1_at10/112+5548055..5549534expressed protein
LOC_Os02g10540Os.25094.1.A1_at11/112+5550089..5552103Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os02g10550OsAffx.11976.2.S1_s_at11/112+5554686..5556179NB-ARC domain containing protein, expressed
LOC_Os02g10560OsAffx.2566.1.S1_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.2566.1.S1_x_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.3289.2.A1_at1/112+5560274..5561053hypothetical protein
LOC_Os02g10570OsAffx.2567.1.S1_at11/112+5561298..5563775hypothetical protein
LOC_Os02g10570OsAffx.16205.1.S1_at1/112+5561298..5563775hypothetical protein
LOC_Os02g10580OsAffx.11976.1.S1_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10580OsAffx.11976.2.S1_s_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10590Os.52104.1.S1_at11/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_x_at2/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_at1/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10600OsAffx.11977.1.S1_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10600Os.28395.1.S1_x_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10614OsAffx.24188.1.S1_at11/112+5584279..5586144expressed protein
LOC_Os02g10614OsAffx.24188.1.S1_x_at11/112+5584279..5586144expressed protein
LOC_Os02g10630Os.16187.1.S1_at9/112+5586959..5593645C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52104.1.S1_at--497--971Chr02:5568992..5569016 (25 bp)
AGGAGATGTCGTGCAATTCAACTAT
LOC_Os02g10590
Os.52104.1.S1_at--125--3151Chr02:5568978..5569002 (25 bp)
AATTCAACTATGTGTGCCGCCGCGC
LOC_Os02g10590
Os.52104.1.S1_at--207--4531Chr02:5568963..5568987 (25 bp)
GCCGCCGCGCAAATGGTTATTTCGT
LOC_Os02g10590
Os.52104.1.S1_at--4--5051Chr02:5568802..5568826 (25 bp)
GCACGGTTGACCAGTTTAGCGGCGA
LOC_Os02g10590
Os.52104.1.S1_at--210--6011Chr02:5568779..5568803 (25 bp)
GAGAGTAAGCCGGTCACACTTGCAC
LOC_Os02g10590
Os.52104.1.S1_at--1101--4251Chr02:5568770..5568794 (25 bp)
CCGGTCACACTTGCACTTGATGGAA
LOC_Os02g10590
Os.52104.1.S1_at--1151--5911Chr02:5568396..5568420 (25 bp)
GAGCTTGCAGCCCATACCAGAAGAG
LOC_Os02g10590
Os.52104.1.S1_at--1014--1711Chr02:5568212..5568405 (25 bp)
ACCAGAAGAGTTCGGTCCACGGCGA
LOC_Os02g10590
Os.52104.1.S1_at--492--591Chr02:5568174..5568198 (25 bp)
ATGCCAAGGAGCCTCTGGTGTTTGA
LOC_Os02g10590
Os.52104.1.S1_at--489--3851Chr02:5568128..5568152 (25 bp)
CTGACCCTGAATTTTTCTGCCATTA
LOC_Os02g10590
Os.52104.1.S1_at--259--391Chr02:5568096..5568120 (25 bp)
ATCACATCCTATAGTGTTCACTCTT
LOC_Os02g10590
Target Sequence 
AGGAGATGTCGTGCAATTCAACTATGTGTGCCGCCGCGCAAATGGTTATTTCGTGCATAGCACGGTTGACCAGTTTAGCG
GCGAGAGTAAGCCGGTCACACTTGCACTTGATGGAAAAGAGATGATTCGAGGTCTCAAAGACGTCATCGTTGGAATGAAG
ACAGGAGGTAAGAGGAGAGCTCTGATACCTCCTCAAGTAGGTTACACTGATGAGAGCTTGCAGCCCATACCAGAAGAGTT
CGGTCCACGGCGAAGCCTCCTGTCACATGCCAAGGAGCCTCTGGTGTTTGAGGTTCAGCTGCTCAAGGTCCTCTGACCCT
GAATTTTTCTGCCATTATCTAATCATCACATCCTATAGTGTTCACTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis