Browse Element(s) Details


Os.25094.1.A1_at

Description gb:AK070231.1
DB_XREF= gi:32980255
TID=Os.25094.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041J19, full insert sequence.
FL= gb:AK070231.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1054011/11Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10510Os.9235.1.S1_at11/112+5523998..5528722Ubiquitin family protein, expressed
LOC_Os02g10520Os.50238.1.S1_x_at11/112+5529956..5536941subtilisin-like protease, putative, expressed
LOC_Os02g10530Os.54540.1.S1_at10/112+5548055..5549534expressed protein
LOC_Os02g10540Os.25094.1.A1_at11/112+5550089..5552103Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os02g10550OsAffx.11976.2.S1_s_at11/112+5554686..5556179NB-ARC domain containing protein, expressed
LOC_Os02g10560OsAffx.2566.1.S1_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.2566.1.S1_x_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.3289.2.A1_at1/112+5560274..5561053hypothetical protein
LOC_Os02g10570OsAffx.2567.1.S1_at11/112+5561298..5563775hypothetical protein
LOC_Os02g10570OsAffx.16205.1.S1_at1/112+5561298..5563775hypothetical protein
LOC_Os02g10580OsAffx.11976.1.S1_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10580OsAffx.11976.2.S1_s_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10590Os.52104.1.S1_at11/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_x_at2/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_at1/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10600OsAffx.11977.1.S1_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10600Os.28395.1.S1_x_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25094.1.A1_at--394--8551Chr02:5550641..5550665 (25 bp)
TGGAGAAATTTGACGCTGCTGCTAA
LOC_Os02g10540
Os.25094.1.A1_at--1049--8051Chr02:5550550..5550574 (25 bp)
GGAGAAGGCCCCTGTCATTCTGAAG
LOC_Os02g10540
Os.25094.1.A1_at--132--111Chr02:5550534..5550558 (25 bp)
ATTCTGAAGCAGTCACTCACGAAGG
LOC_Os02g10540
Os.25094.1.A1_at--260--7931Chr02:5550446..5550470 (25 bp)
GGATTAACTCCTTTGGCACTACTAC
LOC_Os02g10540
Os.25094.1.A1_at--720--7111Chr02:5550390..5550414 (25 bp)
GTCAGGCATTAGAGGTCGCAGTATC
LOC_Os02g10540
Os.25094.1.A1_at--155--7231Chr02:5550376..5550400 (25 bp)
GTCGCAGTATCTCTACACTTTTGTA
LOC_Os02g10540
Os.25094.1.A1_at--296--5171Chr02:5550305..5550329 (25 bp)
GAATAAACTTTCTTCGACCACTACA
LOC_Os02g10540
Os.25094.1.A1_at--702--5851Chr02:5550290..5550314 (25 bp)
GACCACTACAACTTTCCTGATGTAT
LOC_Os02g10540
Os.25094.1.A1_at--475--5211Chr02:5550227..5550251 (25 bp)
GAATTGCCTATGCTGATACCTGTAA
LOC_Os02g10540
Os.25094.1.A1_at--443--311Chr02:5550212..5550236 (25 bp)
ATACCTGTAACTTGTTCTGCATCTG
LOC_Os02g10540
Os.25094.1.A1_at--787--1331Chr02:5550139..5550163 (25 bp)
AGAGTACTTGAAACCTTGTCTGCAA
LOC_Os02g10540
Target Sequence 
TGGAGAAATTTGACGCTGCTGCTAAAATTAAGATCATCAAGGAGATTAGAACATTCACAGATTTGGGGCTGAAGGAGGCG
AAGGAGCTAGTGGAGAAGGCCCCTGTCATTCTGAAGCAGTCACTCACGAAGGAGGAAGCTGAGGCAATCATAGAGAAGAT
TAAGGTAGCTGGCGGTGTCGCTGTGATGGAGTGAAGGATTAACTCCTTTGGCACTACTACCCTTTTGTTTTCTTCAATTT
TTGTTAGCATGGTCAGGCATTAGAGGTCGCAGTATCTCTACACTTTTGTAGGAAATGTTCAGCTGTGACAGGTAAACATG
GGCCATGATTTGGTCTGAATAAACTTTCTTCGACCACTACAACTTTCCTGATGTATTATNGTGACATTGGGACCGAGTGA
ATGGAATGTAGACAGAATTGCCTATGCTGATACCTGTAACTTGTTCTGCATCTGTTANTGTNACTTACAAGCATGCAGTT
TTGGTTGAAGTGCAATGGGCATAGAGTACTTGAAACCTTGTCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25094.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis