Browse Element(s) Details


Os.50238.1.S1_x_at

Description gb:AK120287.1
DB_XREF= gi:37989910
TID=Os.50238.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050B17, full insert sequence.
FL= gb:AK120287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1052011/11subtilisin-like protease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10480Os.7758.1.S1_at11/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10480OsAffx.21601.1.S1_at1/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10490OsAffx.24187.1.S1_at11/112+5511434..5517919expressed protein
LOC_Os02g10500Os.51300.1.S1_x_at4/112+5519608..5519865hypothetical protein
LOC_Os02g10510Os.9235.1.S1_at11/112+5523998..5528722Ubiquitin family protein, expressed
LOC_Os02g10520Os.50238.1.S1_x_at11/112+5529956..5536941subtilisin-like protease, putative, expressed
LOC_Os02g10530Os.54540.1.S1_at10/112+5548055..5549534expressed protein
LOC_Os02g10540Os.25094.1.A1_at11/112+5550089..5552103Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os02g10550OsAffx.11976.2.S1_s_at11/112+5554686..5556179NB-ARC domain containing protein, expressed
LOC_Os02g10560OsAffx.2566.1.S1_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.2566.1.S1_x_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.3289.2.A1_at1/112+5560274..5561053hypothetical protein
LOC_Os02g10570OsAffx.2567.1.S1_at11/112+5561298..5563775hypothetical protein
LOC_Os02g10570OsAffx.16205.1.S1_at1/112+5561298..5563775hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009733biological_processresponse to auxin stimulus
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0010102biological_processlateral root morphogenesis
GO:0005576cellular_componentextracellular region
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0004291molecular_functionsubtilisin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50238.1.S1_x_at--424--2891Chr02:5530483..5530507 (25 bp)
AAGGTGCAGGACCTCAACTACCCGT
LOC_Os02g10520
Os.50238.1.S1_x_at--752--5091Chr02:5530416..5530440 (25 bp)
GCACGGTGAAGAACGTCGGCAAGCC
LOC_Os02g10520
Os.50238.1.S1_x_at--273--7151Chr02:5530387..5530411 (25 bp)
GTCTACAAGGCGTACGTGACCTCGC
LOC_Os02g10520
Os.50238.1.S1_x_at--638--2171Chr02:5530332..5530356 (25 bp)
ACACGCTGCCGTTCTTGCTCAAGGG
LOC_Os02g10520
Os.50238.1.S1_x_at--122--1451Chr02:5530302..5530326 (25 bp)
AGAAGACGTTCCAGGTGAGGTTCGA
LOC_Os02g10520
Os.50238.1.S1_x_at--111--5451Chr02:5530271..5530295 (25 bp)
GAACGCGTCGCTCGCCATGGATTAC
LOC_Os02g10520
Os.50238.1.S1_x_at--357--831Chr02:5530255..5530279 (25 bp)
ATGGATTACTCCTTCGGCGCGCTCG
LOC_Os02g10520
Os.50238.1.S1_x_at--146--4811Chr02:5530235..5530259 (25 bp)
GCTCGTCTGGACCAACGGCAAGCAG
LOC_Os02g10520
Os.50238.1.S1_x_at--285--5171Chr02:5530218..5530242 (25 bp)
GCAAGCAGTTCGTCAGGTCGCCTCT
LOC_Os02g10520
Os.50238.1.S1_x_at--750--1031Chr02:5530204..5530228 (25 bp)
AGGTCGCCTCTCGTGGTGAAGACGA
LOC_Os02g10520
Os.50238.1.S1_x_at--511--5811Chr02:5530178..5530202 (25 bp)
GACGCCGACGATGGCATGATCGTGA
LOC_Os02g10520
Target Sequence 
AAGGTGCAGGACCTCAACTACCCGTCCATCACCGTCGTCAACCTCACCTCGTCGGCCACCGTCCGGCGCACGGTGAAGAA
CGTCGGCAAGCCGGGGGTCTACAAGGCGTACGTGACCTCGCCGGCCGGCGTGCGCGTCACGGTGAGCCCGGACACGCTGC
CGTTCTTGCTCAAGGGGGAGAAGAAGACGTTCCAGGTGAGGTTCGAGGTGACGAACGCGTCGCTCGCCATGGATTACTCC
TTCGGCGCGCTCGTCTGGACCAACGGCAAGCAGTTCGTCAGGTCGCCTCTCGTGGTGAAGACGACGACGCCGACGATGGC
ATGATCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50238.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis