Browse Element(s) Details


OsAffx.24187.1.S1_at

Description tigr:9630.m00971
TID=OsAffx.24187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1049011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10440Os.49257.1.S1_x_at11/112+5483081..5489299expressed protein
LOC_Os02g10440Os.49257.2.S1_at11/112+5483081..5489299expressed protein
LOC_Os02g10450Os.15386.1.S1_at11/112+5490496..5491873expressed protein
LOC_Os02g10460OsAffx.11974.1.S1_at11/112+5492446..5493614hypothetical protein
LOC_Os02g10470Os.19187.1.S1_at11/112+5501165..5504378calcium-binding EF hand family protein, putative, expressed
LOC_Os02g10480Os.7758.1.S1_at11/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10480OsAffx.21601.1.S1_at1/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10490OsAffx.24187.1.S1_at11/112+5511434..5517919expressed protein
LOC_Os02g10500Os.51300.1.S1_x_at4/112+5519608..5519865hypothetical protein
LOC_Os02g10510Os.9235.1.S1_at11/112+5523998..5528722Ubiquitin family protein, expressed
LOC_Os02g10520Os.50238.1.S1_x_at11/112+5529956..5536941subtilisin-like protease, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24187.1.S1_at--1116--5751Chr02:5512551..5512575 (25 bp)
GACGTGTTACACTGCCGAGTTGAAG
LOC_Os02g10490
OsAffx.24187.1.S1_at--993--6491Chr02:5512527..5512551 (25 bp)
GATAGTCTCAAATCATGGGCAGCAT
LOC_Os02g10490
OsAffx.24187.1.S1_at--715--671Chr02:5512461..5512485 (25 bp)
ATGAACTCCATCACAGTAATGCTGA
LOC_Os02g10490
OsAffx.24187.1.S1_at--1146--2991Chr02:5512279..5512300 (22 bp)
AATGCACAAGCTAACCGGACCACTA
LOC_Os02g10490
OsAffx.24187.1.S1_at--466--8011Chr02:5512263..5512287 (25 bp)
GGACCACTAGGCTAAAACGGATTCT
LOC_Os02g10490
OsAffx.24187.1.S1_at--530--6171Chr02:5512196..5512220 (25 bp)
GAGGATGCAGGCTCTCCGTGTTCAT
LOC_Os02g10490
OsAffx.24187.1.S1_at--285--7431Chr02:5512179..5512203 (25 bp)
GTGTTCATCTCTCTGATTCCATTTA
LOC_Os02g10490
OsAffx.24187.1.S1_at--538--451Chr02:5512152..5512176 (25 bp)
ATCTACATGAAGTCTTTTCCAGCAG
LOC_Os02g10490
OsAffx.24187.1.S1_at--971--10251Chr02:5512123..5512147 (25 bp)
TTTGTTGCTATTTGCCGAGGATTCT
LOC_Os02g10490
OsAffx.24187.1.S1_at--630--7651Chr02:5511526..5511548 (23 bp)
GGGATCCTGGACGATGTCTTTGCAT
LOC_Os02g10490
OsAffx.24187.1.S1_at--96--2351Chr02:5511491..5511515 (25 bp)
AAAGCATCTAGGCAACTCCCTGCAG
LOC_Os02g10490
Target Sequence 
GACGTGTTACACTGCCGAGTTGAAGATAGTCTCAAATCATGGGCAGCATATCTAACAATAACAAATGGGAATGCTGTTTT
CGGAGAGCAAATGAACTCCATCACAGTAATGCTGAGGAAGAAGTACAAGAAATACCTGCAAGCAATTGTGGAGAAGCTTG
TCAGTAATGCACAAGCTAACCGGACCACTAGGCTAAAACGGATTCTTGAAGAAACGAGAGAAAGCGAAGGAGAAAGCGAT
ATACGTGAGAGGATGCAGGCTCTCCGTGTTCATCTCTCTGATTCCATTTACAATCTACATGAAGTCTTTTCCAGCAGAAT
ATTTGTTGCTATTTGCCGAGGATTCTGGGACAGGTTGGGTCAGATTGTGTTGAGGTTTCTTGAGAGCAGAAAAGAGAACA
GGATTTGGTACAGAGGATCTGATTATGCATTAGGGATCCTGGACGATGTCTTTGCATCAGAAATGCAAAAGCATCTAGGC
AACTCCCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis