Browse Element(s) Details


Os.19187.1.S1_at

Description gb:AK058544.1
DB_XREF= gi:32968562
TID=Os.19187.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-B12, full insert sequence.
FL= gb:AK058544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1047011/11calcium-binding EF hand family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10420NANA2+5477110..5478166hypothetical protein
LOC_Os02g10430Os.27268.1.A1_at11/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10430Os.16682.2.S1_x_at1/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10440Os.49257.1.S1_x_at11/112+5483081..5489299expressed protein
LOC_Os02g10440Os.49257.2.S1_at11/112+5483081..5489299expressed protein
LOC_Os02g10450Os.15386.1.S1_at11/112+5490496..5491873expressed protein
LOC_Os02g10460OsAffx.11974.1.S1_at11/112+5492446..5493614hypothetical protein
LOC_Os02g10470Os.19187.1.S1_at11/112+5501165..5504378calcium-binding EF hand family protein, putative, expressed
LOC_Os02g10480Os.7758.1.S1_at11/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10480OsAffx.21601.1.S1_at1/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10490OsAffx.24187.1.S1_at11/112+5511434..5517919expressed protein
LOC_Os02g10500Os.51300.1.S1_x_at4/112+5519608..5519865hypothetical protein
LOC_Os02g10510Os.9235.1.S1_at11/112+5523998..5528722Ubiquitin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19187.1.S1_at--238--2051Chr02:5503686..5503710 (25 bp)
ACTTTCGAGACATTGGTTGATTCAT
LOC_Os02g10470
Os.19187.1.S1_at--569--7911Chr02:5503700..5503724 (25 bp)
GGTTGATTCATTCGTCTTCTTGGAC
LOC_Os02g10470
Os.19187.1.S1_at--789--2631Chr02:5503778..5503802 (25 bp)
AACCATCGGAGGAGAACGCTCTTCT
LOC_Os02g10470
Os.19187.1.S1_at--72--2931Chr02:5503943..5503967 (25 bp)
AATGGAACGGTGACCTTCAAGGAGT
LOC_Os02g10470
Os.19187.1.S1_at--974--3751Chr02:5503970..5503994 (25 bp)
CTCTTCGCTTTTACTCGTTGGGTGG
LOC_Os02g10470
Os.19187.1.S1_at--1017--6531Chr02:5504045..5504069 (25 bp)
GATTTACTCATCCTGAATTAGGCCA
LOC_Os02g10470
Os.19187.1.S1_at--614--5211Chr02:5504059..5504083 (25 bp)
GAATTAGGCCAAGTCAGCAGCCCTC
LOC_Os02g10470
Os.19187.1.S1_at--932--3451Chr02:5504097..5504121 (25 bp)
CAGTCCTCCTATTGTGGCTTGGAGT
LOC_Os02g10470
Os.19187.1.S1_at--476--851Chr02:5504240..5504264 (25 bp)
ATGGCATTTGATCCAATTGATCGTA
LOC_Os02g10470
Os.19187.1.S1_at--306--6951Chr02:5504262..5504286 (25 bp)
GTAGATAATTAACCCTGTCATTCAA
LOC_Os02g10470
Os.19187.1.S1_at--771--7051Chr02:5504295..5504319 (25 bp)
GTAAGCTTGGATGTTTCAGAGATAA
LOC_Os02g10470
Target Sequence 
ACTTTCGAGACATTGGTTGATTCATTCGTCTTCTTGGACAAAAACAAAGATGGGTATGTCANCAAGAATGAGATGATACA
AGCGATCNACGAAACCATCGGAGGAGAACGCTCTTCTGGGCGGATAGGCATGAAAAGATTTGAGGAAATGGATTGGGACA
AGAATGGAACGGTGACCTTCAAGGAGTTCCTCTTCGCTTTTACTCGTTGGGTGGGGATTGATGATAACGAAGATGACGAC
GATGAGGAGGGAGTGTAAAATGAAGATTTACTCATCCTGAATTAGGCCAAGTCAGCAGCCCTCAGGAGCACTCAAGCAGT
CCTCCTATTGTGGCTTGGAGTACTCAATGATAAACCGGAGATTAGTTCATGTTGTTTATGTTCTTGTTAATATAAAGATT
GGACCCAAGTTATTTNTAGTTGTGGCGAAAGTTTAGTGGTATAAAGCTGCTTTGGTCATATGGCATTTGATCCAATTGAT
CGTAGATAATTAACCCTGTCATTCAAAAAAAATTGTAAGCTTGGATGTTTCAGAGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis