Browse Element(s) Details


Os.15386.1.S1_at

Description gb:AK067695.1
DB_XREF= gi:32977713
TID=Os.15386.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15386 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118O05, full insert sequence.
FL= gb:AK067695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1045011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10380OsAffx.2564.1.S1_x_at2/112+5465521..5468116regulator of chromosome condensation, putative, expressed
LOC_Os02g10390Os.28403.1.S1_a_at11/112+5468374..5470496Chlorophyll a-b binding protein 8, chloroplast precursor, putative, expressed
LOC_Os02g10400Os.52183.1.S1_at11/112+5470944..5475134expressed protein
LOC_Os02g10410OsAffx.2565.1.S1_at11/112+5475698..5475958hypothetical protein
LOC_Os02g10420NANA2+5477110..5478166hypothetical protein
LOC_Os02g10430Os.27268.1.A1_at11/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10430Os.16682.2.S1_x_at1/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10440Os.49257.1.S1_x_at11/112+5483081..5489299expressed protein
LOC_Os02g10440Os.49257.2.S1_at11/112+5483081..5489299expressed protein
LOC_Os02g10450Os.15386.1.S1_at11/112+5490496..5491873expressed protein
LOC_Os02g10460OsAffx.11974.1.S1_at11/112+5492446..5493614hypothetical protein
LOC_Os02g10470Os.19187.1.S1_at11/112+5501165..5504378calcium-binding EF hand family protein, putative, expressed
LOC_Os02g10480Os.7758.1.S1_at11/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10480OsAffx.21601.1.S1_at1/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10490OsAffx.24187.1.S1_at11/112+5511434..5517919expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15386.1.S1_at--1012--10051Chr02:5491017..5491041 (25 bp)
TAGTAGGCATCCGTCTAGTCTCATC
LOC_Os02g10450
Os.15386.1.S1_at--850--2671Chr02:5490918..5490942 (25 bp)
AAGCGCTATGCTTGGCTTCCATGGA
LOC_Os02g10450
Os.15386.1.S1_at--802--8071Chr02:5490885..5490909 (25 bp)
GGAGCTTTTCTTGCATTACATTCAG
LOC_Os02g10450
Os.15386.1.S1_at--174--10751Chr02:5490738..5490762 (25 bp)
TTGTAGTCCGCTGCAAACGGGACAA
LOC_Os02g10450
Os.15386.1.S1_at--419--8991Chr02:5490708..5490732 (25 bp)
TGAAGATTTTCAGTTCCCATGGGTT
LOC_Os02g10450
Os.15386.1.S1_at--56--251Chr02:5490652..5490676 (25 bp)
ATATAAGCAAGACCCACCAACACTT
LOC_Os02g10450
Os.15386.1.S1_at--676--2471Chr02:5490634..5490658 (25 bp)
AACACTTCTGTTTCACATTTTGGTC
LOC_Os02g10450
Os.15386.1.S1_at--341--171Chr02:5490618..5490642 (25 bp)
ATTTTGGTCCTTCATAACTTGTGCA
LOC_Os02g10450
Os.15386.1.S1_at--1143--7271Chr02:5490582..5490606 (25 bp)
GTGCCATGTGCCAATGTTCATTTCT
LOC_Os02g10450
Os.15386.1.S1_at--1132--9591Chr02:5490565..5490589 (25 bp)
TCATTTCTCATGCTTTCTACACTAC
LOC_Os02g10450
Os.15386.1.S1_at--437--5211Chr02:5490519..5490543 (25 bp)
GAATTTTCCTTCTACACTACATGTA
LOC_Os02g10450
Target Sequence 
TAGTAGGCATCCGTCTAGTCTCATCCGNCTCCTCATCTCAAGCTATCCGTCACCGAGTTCCCGGTGAAAACCGAGGCACG
TGAGGAGGTTGGTGTAGGGGAAGCGCTATGCTTGGCTTCCATGGAGGACGAGGGGAGCTTTTCTTGCATTACATTCAGGC
TTGATGACCGCGAACANCCACATGTCTTATGATAAAGATATACNCGAATTCTATCCAAGGAAGATGTATTTAAATCTCAC
CACCTATAAAATAGTGGAGGGGGAGAAGACTGATATGGACANTTGTAGTCCGCTGCAAACGGGACAAGGCCTTGAAGATT
TTCAGTTCCCATGGGTTCTCCTCTCCACCCATCGCCTTTGCTTTATCNATATAAGCAAGACCCACCAACACTTCTGTTTC
ACATTTTGGTCCTTCATAACTTGTGCAAATGTATATANGTGCCATGTGCCAATGTTCATTTCTCATGCTTTCTACACTAC
ATAGGGAAATTTCCTTGTACTGAATTTTCCTTCTACACTACATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis