Browse Element(s) Details


OsAffx.2565.1.S1_at

Description tigr:9630.m00960
TID=OsAffx.2565.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1041011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10360OsAffx.11973.1.S1_at11/112+5451819..5453090GRAS family transcription factor containing protein
LOC_Os02g10370Os.12121.1.S1_at11/112+5463806..5464415expressed protein
LOC_Os02g10380OsAffx.2564.1.S1_x_at2/112+5465521..5468116regulator of chromosome condensation, putative, expressed
LOC_Os02g10390Os.28403.1.S1_a_at11/112+5468374..5470496Chlorophyll a-b binding protein 8, chloroplast precursor, putative, expressed
LOC_Os02g10400Os.52183.1.S1_at11/112+5470944..5475134expressed protein
LOC_Os02g10410OsAffx.2565.1.S1_at11/112+5475698..5475958hypothetical protein
LOC_Os02g10420NANA2+5477110..5478166hypothetical protein
LOC_Os02g10430Os.27268.1.A1_at11/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10430Os.16682.2.S1_x_at1/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10440Os.49257.1.S1_x_at11/112+5483081..5489299expressed protein
LOC_Os02g10440Os.49257.2.S1_at11/112+5483081..5489299expressed protein
LOC_Os02g10450Os.15386.1.S1_at11/112+5490496..5491873expressed protein
LOC_Os02g10460OsAffx.11974.1.S1_at11/112+5492446..5493614hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2565.1.S1_at--127--9991Chr02:5475879..5475903 (25 bp)
TAGACCATGCGGGAAGACGGAGTTC
LOC_Os02g10410
OsAffx.2565.1.S1_at--535--5751Chr02:5475864..5475888 (25 bp)
GACGGAGTTCGCTGGAGCTAAACAT
LOC_Os02g10410
OsAffx.2565.1.S1_at--1085--10631Chr02:5475857..5475881 (25 bp)
TTCGCTGGAGCTAAACATGCAGGGA
LOC_Os02g10410
OsAffx.2565.1.S1_at--1162--8011Chr02:5475835..5475859 (25 bp)
GGAGGAGAGCCATGCCGTTGCCACA
LOC_Os02g10410
OsAffx.2565.1.S1_at--1038--5991Chr02:5475831..5475855 (25 bp)
GAGAGCCATGCCGTTGCCACAAACT
LOC_Os02g10410
OsAffx.2565.1.S1_at--114--10671Chr02:5475804..5475828 (25 bp)
TTCCATCGGCTGCGCAGGACTACGT
LOC_Os02g10410
OsAffx.2565.1.S1_at--423--571Chr02:5475768..5475792 (25 bp)
ATCCTCTGCTAGTTCCACTAACACT
LOC_Os02g10410
OsAffx.2565.1.S1_at--50--4871Chr02:5475761..5475785 (25 bp)
GCTAGTTCCACTAACACTCAAGGGC
LOC_Os02g10410
OsAffx.2565.1.S1_at--621--10631Chr02:5475756..5475780 (25 bp)
TTCCACTAACACTCAAGGGCGGCGA
LOC_Os02g10410
OsAffx.2565.1.S1_at--860--9711Chr02:5475744..5475768 (25 bp)
TCAAGGGCGGCGACAATCCTAGTTT
LOC_Os02g10410
OsAffx.2565.1.S1_at--524--8331Chr02:5475739..5475763 (25 bp)
GGCGGCGACAATCCTAGTTTACTGG
LOC_Os02g10410
Target Sequence 
TAGACCATGCGGGAAGACGGAGTTCGCTGGAGCTAAACATGCAGGGAGGAGAGCCATGCCGTTGCCACAAACTCCTTCCA
TCGGCTGCGCAGGACTACGTCCGCAAGCCCCATCCTCTGCTAGTTCCACTAACACTCAAGGGCGGCGACAATCCTAGTTT
ACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis