Browse Element(s) Details


Os.12121.1.S1_at

Description gb:CA761612
DB_XREF= gi:25805651
DB_XREF=BR060011B10C07.ab1
CLONE=BR060011B10C07.ab1
TID=Os.12121.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12121 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1037011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10350Os.7662.1.S1_at11/112+5442111..5447378Mlo family protein, expressed
LOC_Os02g10360OsAffx.11973.1.S1_at11/112+5451819..5453090GRAS family transcription factor containing protein
LOC_Os02g10370Os.12121.1.S1_at11/112+5463806..5464415expressed protein
LOC_Os02g10380OsAffx.2564.1.S1_x_at2/112+5465521..5468116regulator of chromosome condensation, putative, expressed
LOC_Os02g10390Os.28403.1.S1_a_at11/112+5468374..5470496Chlorophyll a-b binding protein 8, chloroplast precursor, putative, expressed
LOC_Os02g10400Os.52183.1.S1_at11/112+5470944..5475134expressed protein
LOC_Os02g10410OsAffx.2565.1.S1_at11/112+5475698..5475958hypothetical protein
LOC_Os02g10420NANA2+5477110..5478166hypothetical protein
LOC_Os02g10430Os.27268.1.A1_at11/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10430Os.16682.2.S1_x_at1/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10440Os.49257.1.S1_x_at11/112+5483081..5489299expressed protein
LOC_Os02g10440Os.49257.2.S1_at11/112+5483081..5489299expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12121.1.S1_at--1065--3791Chr02:5464345..5464369 (25 bp)
CTCGCGCGATCAATCGTCGGCGGCA
LOC_Os02g10370
Os.12121.1.S1_at--255--5071Chr02:5464125..5464254 (25 bp)
GCAGCGCCGTGAGCCTGTACTACGT
LOC_Os02g10370
Os.12121.1.S1_at--1050--951Chr02:5464020..5464044 (25 bp)
AGGACGTGTGACTTCGCTGTGTGCT
LOC_Os02g10370
Os.12121.1.S1_at--750--8831Chr02:5463988..5464012 (25 bp)
TGATCCCGGCCTGTGTAGAGACGGC
LOC_Os02g10370
Os.12121.1.S1_at--193--10031Chr02:5463973..5463997 (25 bp)
TAGAGACGGCCTCTCTGTTCGAGCT
LOC_Os02g10370
Os.12121.1.S1_at--603--231Chr02:5463937..5463961 (25 bp)
ATATTTTTGCTTACCTTGTTTCTTG
LOC_Os02g10370
Os.12121.1.S1_at--750--4891Chr02:5463929..5463953 (25 bp)
GCTTACCTTGTTTCTTGTTTCATGA
LOC_Os02g10370
Os.12121.1.S1_at--497--2971Chr02:5463889..5463913 (25 bp)
AATGTACTAGTAATTGCCCCCTTTG
LOC_Os02g10370
Os.12121.1.S1_at--320--4211Chr02:5463872..5463896 (25 bp)
CCCCTTTGTCATTGCGATAACTGGA
LOC_Os02g10370
Os.12121.1.S1_at--151--4631Chr02:5463859..5463883 (25 bp)
GCGATAACTGGATTACAATTTGCGA
LOC_Os02g10370
Os.12121.1.S1_at--722--2231Chr02:5463845..5463869 (25 bp)
ACAATTTGCGATATGGGAGCCAGAA
LOC_Os02g10370
Target Sequence 
CTCGCGCGATCAATCGTCGGCGGCANCGGCGGCGGCGGCGGCGGGATGGGGCTCGGGGGGCGAGGCGTGGTGGGGGAGAG
GTGGTCGCAGCGCGTCCTCTGGCTCTGCGCCATCGGCAGCGCCGTGAGCCTGTACTACGTGGCGGTGGAGAGGCAGGCGC
AGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGACGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGT
GTGCTGGAGAGGTGATCCCGGCCTGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTT
GTTTCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAAT
TTGCGATATGGGAGCCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis