Browse Element(s) Details


Os.7662.1.S1_at

Description gb:AK066134.1
DB_XREF= gi:32976152
TID=Os.7662.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7662 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052N01, full insert sequence.
FL= gb:AK066134.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1035011/11Mlo family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10310Os.8160.1.S1_at11/112+5414917..5418652Fumarylacetoacetase, putative, expressed
LOC_Os02g10320Os.51818.1.S1_at10/112+5422137..54249243-oxoacyl-synthase, mitochondrial precursor, putative, expressed
LOC_Os02g10330NANA2+5428867..5431872hypothetical protein
LOC_Os02g10340OsAffx.20387.1.S1_x_at1/112+5432508..5438758retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g10350Os.7662.1.S1_at11/112+5442111..5447378Mlo family protein, expressed
LOC_Os02g10360OsAffx.11973.1.S1_at11/112+5451819..5453090GRAS family transcription factor containing protein
LOC_Os02g10370Os.12121.1.S1_at11/112+5463806..5464415expressed protein
LOC_Os02g10380OsAffx.2564.1.S1_x_at2/112+5465521..5468116regulator of chromosome condensation, putative, expressed
LOC_Os02g10390Os.28403.1.S1_a_at11/112+5468374..5470496Chlorophyll a-b binding protein 8, chloroplast precursor, putative, expressed
LOC_Os02g10400Os.52183.1.S1_at11/112+5470944..5475134expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0005886cellular_componentplasma membrane
GO:0016021cellular_componentintegral to membrane
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7662.1.S1_at--596--931Chr02:5445827..5445851 (25 bp)
AGGAAACCCCTGGACAAAGCCATGC
LOC_Os02g10350
Os.7662.1.S1_at--390--5951Chr02:5445855..5445879 (25 bp)
GAGCACTTCTGGTTCAGCAAGCCTA
LOC_Os02g10350
Os.7662.1.S1_at--145--2651Chr02:5445873..5445897 (25 bp)
AAGCCTAGGATTGTCCTCCATTTGA
LOC_Os02g10350
Os.7662.1.S1_at--750--4271Chr02:5445908..5445932 (25 bp)
CCTGTTCCAGAACTCCTTTGAGATG
LOC_Os02g10350
Os.7662.1.S1_at--187--10371Chr02:5445936..5446109 (25 bp)
TTTTTCTTCTGGGTTCTGGCAACAT
LOC_Os02g10350
Os.7662.1.S1_at--707--5491Chr02:5446135..5446159 (25 bp)
GAACAAGATTTATGCCCTCCCCAGA
LOC_Os02g10350
Os.7662.1.S1_at--460--871Chr02:5447066..5447090 (25 bp)
AGGCCCACGGCCGTAGATATTATCG
LOC_Os02g10350
Os.7662.1.S1_at--1073--6911Chr02:5447176..5447200 (25 bp)
GTAGGTAAGCTACCTTGCGCGACAC
LOC_Os02g10350
Os.7662.1.S1_at--271--5631Chr02:5447196..5447220 (25 bp)
GACACCGTTAGACCAATCGCTACGT
LOC_Os02g10350
Os.7662.1.S1_at--346--1911Chr02:5447217..5447241 (25 bp)
ACGTGCCACGTGTATGGAGTTTGCT
LOC_Os02g10350
Os.7662.1.S1_at--47--8291Chr02:5447323..5447347 (25 bp)
GGCATACATGTACTCTTCTGTGTTA
LOC_Os02g10350
Target Sequence 
AGGAAACCCCTGGACAAAGCCATGCAAGGAGCACTTCTGGTTCAGCAAGCCTAGGATTGTCCTCCATTTGATCCACTTCA
TCCTGTTCCAGAACTCCTTTGAGATGGGTTTTTTCTTCTGGGTTCTGGCAACATATGGGTTTGATTCATGCATCATGGAG
AACAAGATTTATGCCCTCCCCAGACTTGCTATTGGAATCATCGNNNANGNGCNCNNNNNNTNNNNNNCGCNGCCGCCGCA
AGGCCCACGGCCGTAGATATTATCGTATACGGAAGCCCGAGCCGCCGGCGGCCGGTGCCCACGGCGGCCGGCGTGGCGAG
CCGGCGGCATGGAGACGTGTTGCTAGCTGAGTAGGTAAGCTACCTTGCGCGACACCGTTAGACCAATCGCTACGTGCCAC
GTGTATGGAGTTTGCTGATGAGCTGTACAAAATGGAGTTAATTATTAAAATTGTACATGCATGCAAACTTATGGAATTGG
ACACATATCATATTTTTGGCATACATGTACTCTTCTGTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis