Browse Element(s) Details


OsAffx.2564.1.S1_x_at

Description tigr:9630.m00956
TID=OsAffx.2564.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Regulator of chromosome condensation (RCC1), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g103802/11regulator of chromosome condensation, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10350Os.7662.1.S1_at11/112+5442111..5447378Mlo family protein, expressed
LOC_Os02g10360OsAffx.11973.1.S1_at11/112+5451819..5453090GRAS family transcription factor containing protein
LOC_Os02g10370Os.12121.1.S1_at11/112+5463806..5464415expressed protein
LOC_Os02g10380OsAffx.2564.1.S1_x_at2/112+5465521..5468116regulator of chromosome condensation, putative, expressed
LOC_Os02g10390Os.28403.1.S1_a_at11/112+5468374..5470496Chlorophyll a-b binding protein 8, chloroplast precursor, putative, expressed
LOC_Os02g10400Os.52183.1.S1_at11/112+5470944..5475134expressed protein
LOC_Os02g10410OsAffx.2565.1.S1_at11/112+5475698..5475958hypothetical protein
LOC_Os02g10420NANA2+5477110..5478166hypothetical protein
LOC_Os02g10430Os.27268.1.A1_at11/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10430Os.16682.2.S1_x_at1/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10440Os.49257.1.S1_x_at11/112+5483081..5489299expressed protein
LOC_Os02g10440Os.49257.2.S1_at11/112+5483081..5489299expressed protein
LOC_Os02g10450Os.15386.1.S1_at11/112+5490496..5491873expressed protein
LOC_Os02g10460OsAffx.11974.1.S1_at11/112+5492446..5493614hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0003682molecular_functionchromatin binding
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
GO:0005488molecular_functionbinding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2564.1.S1_x_at--936--1011Chr02:5465552..5465576 (25 bp)
AGGTTTCACAGGTTGCTGCTGGGAT
LOC_Os02g10380
OsAffx.2564.1.S1_x_at--943--8631Chr02:5465533..5465557 (25 bp)
TGGGATGGACCATACTCTTCTATTG
LOC_Os02g10380
OsAffx.2564.1.S1_x_at--693--5571Chr02:5465475..5465499 (25 bp)
GAAAGTCCTTTGATTCTTGCCGTTG
NONE
OsAffx.2564.1.S1_x_at--6--6031Chr02:5465444..5465468 (25 bp)
GAGAGGTTGTCATTGTCCATCTACT
NONE
OsAffx.2564.1.S1_x_at--919--771Chr02:5465357..5465381 (25 bp)
ATGTGTTTCTTCCAGCTAGTTTGAC
NONE
OsAffx.2564.1.S1_x_at--773--8951Chr02:5465336..5465360 (25 bp)
TGACATCACATTCCCCTTGAAAGAG
NONE
OsAffx.2564.1.S1_x_at--782--2351Chr02:5465291..5465315 (25 bp)
AAAGCTAGTCAGACGCCAGTGCCAG
NONE
OsAffx.2564.1.S1_x_at--1008--1131Chr02:5465274..5465298 (25 bp)
AGTGCCAGTGTGCATTCTCAAACCT
NONE
OsAffx.2564.1.S1_x_at--161--1231Chr02:5465220..5465244 (25 bp)
AGTTCATTTTCTTCCATCTGTAGTT
NONE
OsAffx.2564.1.S1_x_at--887--5711Chr02:5465192..5465216 (25 bp)
GACTCGGTACTTATGTTCTATGCCA
NONE
OsAffx.2564.1.S1_x_at--476--6731Chr02:5465178..5465202 (25 bp)
GTTCTATGCCAAAGCTTACCCTATT
NONE
Target Sequence 
AGGTTTCACAGGTTGCTGCTGGGATGGACCATACTCTTCTATTGGTTGCTGAGTAGGCTGGGGTTTTCTTCACCACCGAA
AGTCCTTTGATTCTTGCCGTTGTCAGTGGAGAGGTTGTCATTGTCCATCTACTGGATACGATCTTTAAAACAAACAGGCG
ATGTTACTCGATATGCTTGGAACCATGAAATTCAGATGTGTTTCTTCCAGCTAGTTTGACATCACATTCCCCTTGAAAGA
GTTAACAGAATGAAGATAGCAAAAGCTAGTCAGACGCCAGTGCCAGTGTGCATTCTCAAACCTCCTCTTATAGAGCATCT
TTGTGTGTGAAAAGTTCATTTTCTTCCATCTGTAGTTGTAGACTCGGTACTTATGTTCTATGCCAAAGCTTACCCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2564.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis