Browse Element(s) Details


Os.27268.1.A1_at

Description gb:AK061372.1
DB_XREF= gi:32971390
TID=Os.27268.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-304-E12, full insert sequence.
FL= gb:AK061372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1043011/111-imidazole-4-carboxamide isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10370Os.12121.1.S1_at11/112+5463806..5464415expressed protein
LOC_Os02g10380OsAffx.2564.1.S1_x_at2/112+5465521..5468116regulator of chromosome condensation, putative, expressed
LOC_Os02g10390Os.28403.1.S1_a_at11/112+5468374..5470496Chlorophyll a-b binding protein 8, chloroplast precursor, putative, expressed
LOC_Os02g10400Os.52183.1.S1_at11/112+5470944..5475134expressed protein
LOC_Os02g10410OsAffx.2565.1.S1_at11/112+5475698..5475958hypothetical protein
LOC_Os02g10420NANA2+5477110..5478166hypothetical protein
LOC_Os02g10430Os.27268.1.A1_at11/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10430Os.16682.2.S1_x_at1/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10440Os.49257.1.S1_x_at11/112+5483081..5489299expressed protein
LOC_Os02g10440Os.49257.2.S1_at11/112+5483081..5489299expressed protein
LOC_Os02g10450Os.15386.1.S1_at11/112+5490496..5491873expressed protein
LOC_Os02g10460OsAffx.11974.1.S1_at11/112+5492446..5493614hypothetical protein
LOC_Os02g10470Os.19187.1.S1_at11/112+5501165..5504378calcium-binding EF hand family protein, putative, expressed
LOC_Os02g10480Os.7758.1.S1_at11/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10480OsAffx.21601.1.S1_at1/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27268.1.A1_at--292--811Chr02:5479272..5479296 (25 bp)
ATGGGATTACTTGCACCACCTAGGT
LOC_Os02g10430
Os.27268.1.A1_at--1042--2211Chr02:5479243..5479267 (25 bp)
ACAAGTTTGGTCTGATGCGAAGCTA
LOC_Os02g10430
Os.27268.1.A1_at--1064--2331Chr02:5479203..5479227 (25 bp)
AAAGCACGGCCTTACTCGGGATCCT
LOC_Os02g10430
Os.27268.1.A1_at--41--5811Chr02:5479165..5479189 (25 bp)
GACGCTGGCAGTCAGTCTTTATGTG
LOC_Os02g10430
Os.27268.1.A1_at--968--1411Chr02:5479107..5479131 (25 bp)
AGAAATGCTGCTTGGAGCCCTGGGA
LOC_Os02g10430
Os.27268.1.A1_at--935--5871Chr02:5479093..5479117 (25 bp)
GAGCCCTGGGATTGAGCTTCCAGAT
LOC_Os02g10430
Os.27268.1.A1_at--1137--5911Chr02:5479080..5479104 (25 bp)
GAGCTTCCAGATACCAAACGCATAA
LOC_Os02g10430
Os.27268.1.A1_at--1117--7091Chr02:5479021..5479045 (25 bp)
GTCACTCTATGAAGATTGGCACCAG
LOC_Os02g10430
Os.27268.1.A1_at--176--8191Chr02:5478985..5479009 (25 bp)
GGAAGCCTGTTCTTTCACCTTGAAA
LOC_Os02g10430
Os.27268.1.A1_at--1002--1731Chr02:5478969..5478993 (25 bp)
ACCTTGAAATGATGGCCTTTGTCGA
LOC_Os02g10430
Os.27268.1.A1_at--300--5711Chr02:5478791..5478815 (25 bp)
GACGATGAACTTTTCTACCGATATT
LOC_Os02g10430
Target Sequence 
ATGGGATTACTTGCACCACCTAGGTTCTAACAAGTTTGGTCTGATGCGAAGCTATATCACAACTTTGAAAAAGCACGGCC
TTACTCGGGATCCTCAGAGAAGGAAATGACGCTGGCAGTCAGTCTTTATGTGAGTTCATTTTGACGTACCATGAAACCTC
ATAGAAGAAATGCTGCTTGGAGCCCTGGGATTGAGCTTCCAGATACCAAACGCATAATGCATGAAGCTTGACAAGTAAAG
TACTAAATACAGTCACTCTATGAAGATTGGCACCAGATAACAATCTTGGAAGCCTGTTCTTTCACCTTGAAATGATGGCC
TTTGTCGAAATTTTGGCATATCTTCAGTTATATTAGATGGAAAGAATGACATTTGTTGGTTTGAGGCTTAAGGGTGTGTT
TGTTTTGTTCCGTAACAAAACTAAACAAATTTGTGTAATGCTAACCTGAGCAAGACCAAAAATAGTTTATGTGTGTGTTT
TGACGATGAACTTTTCTACCGATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27268.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis