Browse Element(s) Details


OsAffx.11974.1.S1_at

Description tigr:9630.m00965
TID=OsAffx.11974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1046011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10380OsAffx.2564.1.S1_x_at2/112+5465521..5468116regulator of chromosome condensation, putative, expressed
LOC_Os02g10390Os.28403.1.S1_a_at11/112+5468374..5470496Chlorophyll a-b binding protein 8, chloroplast precursor, putative, expressed
LOC_Os02g10400Os.52183.1.S1_at11/112+5470944..5475134expressed protein
LOC_Os02g10410OsAffx.2565.1.S1_at11/112+5475698..5475958hypothetical protein
LOC_Os02g10420NANA2+5477110..5478166hypothetical protein
LOC_Os02g10430Os.27268.1.A1_at11/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10430Os.16682.2.S1_x_at1/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10440Os.49257.1.S1_x_at11/112+5483081..5489299expressed protein
LOC_Os02g10440Os.49257.2.S1_at11/112+5483081..5489299expressed protein
LOC_Os02g10450Os.15386.1.S1_at11/112+5490496..5491873expressed protein
LOC_Os02g10460OsAffx.11974.1.S1_at11/112+5492446..5493614hypothetical protein
LOC_Os02g10470Os.19187.1.S1_at11/112+5501165..5504378calcium-binding EF hand family protein, putative, expressed
LOC_Os02g10480Os.7758.1.S1_at11/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10480OsAffx.21601.1.S1_at1/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10490OsAffx.24187.1.S1_at11/112+5511434..5517919expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11974.1.S1_at--891--5431Chr02:5493133..5493157 (25 bp)
GAACCTACGGCTTCCATGTGGTGGA
LOC_Os02g10460
OsAffx.11974.1.S1_at--1153--8031Chr02:5493167..5493191 (25 bp)
GGAGAAGGTCCACGATTGCAACCTG
LOC_Os02g10460
OsAffx.11974.1.S1_at--947--7451Chr02:5493210..5493234 (25 bp)
GTGTCCATTGGTGGCAGCCTCTTCG
LOC_Os02g10460
OsAffx.11974.1.S1_at--513--3231Chr02:5493319..5493343 (25 bp)
CAAGCTGGCAGCTATTGGTCCAAGA
LOC_Os02g10460
OsAffx.11974.1.S1_at--1033--7271Chr02:5493336..5493360 (25 bp)
GTCCAAGAGTTTCCAGTGGCATCGT
LOC_Os02g10460
OsAffx.11974.1.S1_at--578--5311Chr02:5493364..5493388 (25 bp)
GAAGGATGATTCCTCAGCCACGGAT
LOC_Os02g10460
OsAffx.11974.1.S1_at--201--10671Chr02:5493437..5493461 (25 bp)
TTCCTCTGGTCGAAGCCATGGATGC
LOC_Os02g10460
OsAffx.11974.1.S1_at--946--6971Chr02:5493473..5493497 (25 bp)
GTACCAGATAGAGGGCGCCGAGTCA
LOC_Os02g10460
OsAffx.11974.1.S1_at--348--5391Chr02:5493527..5493551 (25 bp)
GAAGCACCAGGACCAGACATACCAA
LOC_Os02g10460
OsAffx.11974.1.S1_at--594--5671Chr02:5493542..5493566 (25 bp)
GACATACCAATTCAAGGGCCAATCT
LOC_Os02g10460
OsAffx.11974.1.S1_at--141--4391Chr02:5493559..5493583 (25 bp)
GCCAATCTCGATTTCTGGATACACA
LOC_Os02g10460
Target Sequence 
GAACCTACGGCTTCCATGTGGTGGACAAGGCGTGGGAGAAGGTCCACGATTGCAACCTGCCATTTGTTGGCCAGGCCGTG
TCCATTGGTGGCAGCCTCTTCGCCGCCGCCATGCCCAACAATGGCGGCGGCGGCGCTTCTGTGTTCCACATGTCCATCAT
CAAGGTCTCCTCCTCATCATCACCTGCAAGCTGGCAGCTATTGGTCCAAGAGTTTCCAGTGGCATCGTTGGGAAGGATGA
TTCCTCAGCCACGGATCTTCTCTCCCTTGGGAGAGGGCAGCTTCTGTTCTGTCGGGTGGCTGGCTTCCTCTGGTCGAAGC
CATGGATGCCAGATTAAGGAGTACCAGATAGAGGGCGCCGAGTCAAAGAAAGATTTGCAAGCCACAGTACAGGTGAAGCA
CCAGGACCAGACATACCAATTCAAGGGCCAATCTCGATTTCTGGATACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis