Browse Element(s) Details


OsAffx.21601.1.S1_at

Description gb:NM_191386.1
DB_XREF= gi:34909855
GEN=OSJNBb0053G03.9
TID=OsAffx.21601.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0053G03.9 (OSJNBb0053G03.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g104801/11zinc finger and C2 domain protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10430Os.27268.1.A1_at11/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10430Os.16682.2.S1_x_at1/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10440Os.49257.1.S1_x_at11/112+5483081..5489299expressed protein
LOC_Os02g10440Os.49257.2.S1_at11/112+5483081..5489299expressed protein
LOC_Os02g10450Os.15386.1.S1_at11/112+5490496..5491873expressed protein
LOC_Os02g10460OsAffx.11974.1.S1_at11/112+5492446..5493614hypothetical protein
LOC_Os02g10470Os.19187.1.S1_at11/112+5501165..5504378calcium-binding EF hand family protein, putative, expressed
LOC_Os02g10480Os.7758.1.S1_at11/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10480OsAffx.21601.1.S1_at1/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10490OsAffx.24187.1.S1_at11/112+5511434..5517919expressed protein
LOC_Os02g10500Os.51300.1.S1_x_at4/112+5519608..5519865hypothetical protein
LOC_Os02g10510Os.9235.1.S1_at11/112+5523998..5528722Ubiquitin family protein, expressed
LOC_Os02g10520Os.50238.1.S1_x_at11/112+5529956..5536941subtilisin-like protease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005543molecular_functionphospholipid binding
GO:0008060molecular_functionARF GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21601.1.S1_at--4--6451Chr01:32652399..32652423 (25 bp)
GATCAGATCTGAAACTGCTCAACTT
NONE
OsAffx.21601.1.S1_at--598--6411Chr01:32652404..32652428 (25 bp)
GATCTGAAACTGCTCAACTTGCCTC
NONE
OsAffx.21601.1.S1_at--192--5551Chr01:32652409..32652430 (22 bp)
GAAACTGCTCAACTTGCCTCAGTAT
NONE
OsAffx.21601.1.S1_at--647--4831NONE
GCTCAACTTGCCTCAGTATTTCTGT
NONE
OsAffx.21601.1.S1_at--520--3452Chr02:5505550..5505574 (24 bp)
CAGTATTTCTGTTTGTTGATGCATC
LOC_Os02g10480
OsAffx.21601.1.S1_at--712--6651Chr01:32652685..32652709 (25 bp)
GTTGATGCATCAAGTTGGCCGTTGT
NONE
OsAffx.21601.1.S1_at--956--631Chr01:32652689..32652713 (25 bp)
ATGCATCAAGTTGGCCGTTGTGACA
NONE
OsAffx.21601.1.S1_at--460--6611Chr01:32652698..32652722 (25 bp)
GTTGGCCGTTGTGACATGTACTGCA
NONE
OsAffx.21601.1.S1_at--660--6631Chr01:32652705..32652729 (25 bp)
GTTGTGACATGTACTGCACTGACAT
NONE
OsAffx.21601.1.S1_at--219--3851Chr01:32652718..32652742 (25 bp)
CTGCACTGACATGGCTGAAATGGAA
NONE
OsAffx.21601.1.S1_at--366--8491Chr01:32652729..32652753 (25 bp)
TGGCTGAAATGGAATACGATGGCAA
NONE
Target Sequence 
GATCAGATCTGAAACTGCTCAACTTGCCTCAGTATTTCTGTTTGTTGATGCATCAAGTTGGCCGTTGTGACATGTACTGC
ACTGACATGGCTGAAATGGAATACGATGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis