Browse Element(s) Details


Os.16682.2.S1_x_at

Description gb:NM_190339.1
DB_XREF= gi:34907761
GEN=B1065G12.33
TID=Os.16682.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1065G12.33 (B1065G12.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1065G12.33 (B1065G12.33), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g677309/111-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g104301/111-imidazole-4-carboxamide isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67690NANA1+39663660..39668006retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g67700OsAffx.23962.1.S1_at11/111+39672282..39672935hypothetical protein
LOC_Os01g67710OsAffx.21785.2.S1_at9/111+39676432..39678264hypothetical protein
LOC_Os01g67710OsAffx.21785.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67710Os.53962.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67720Os.37837.1.A1_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.2.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.1.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67730Os.16682.2.S1_x_at9/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67730Os.16682.1.S1_at8/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67740Os.48518.1.S1_at11/111+39692769..39701077SMC proteins Flexible Hinge Domain containing protein, expressed
LOC_Os01g67750Os.49959.1.S1_at11/111+39701785..39706394expressed protein
LOC_Os01g67760OsAffx.6537.1.S1_at1/111+39708477..39709213hypothetical protein
LOC_Os01g67770Os.49428.1.S1_at11/111+39714083..39716843myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16682.2.S1_x_at--528--4151Chr01:39690226..39690250 (25 bp)
CGCGCCTGACGAAGCTTGCGCTGCA
LOC_Os01g67730
Os.16682.2.S1_x_at--829--4211NONE
CCGCCCAGATCGGTGGAGGTTGAAT
NONE
Os.16682.2.S1_x_at--782--7911Chr01:39691280..39691304 (25 bp)
GGTTGAATTCACTGATGGTAGCTCA
LOC_Os01g67730
Os.16682.2.S1_x_at--931--811Chr01:39691294..39691318 (25 bp)
ATGGTAGCTCATTCCATCTGTCAGC
LOC_Os01g67730
Os.16682.2.S1_x_at--990--1572Chr01:39691299..39691323 (25 bp)
AGCTCATTCCATCTGTCAGCTGAAT
LOC_Os01g67730
Os.16682.2.S1_x_at--852--3871Chr01:39691311..39691335 (25 bp)
CTGTCAGCTGAATTTCTAAGAGTAC
LOC_Os01g67730
Os.16682.2.S1_x_at--865--9771Chr01:39691327..39691351 (25 bp)
TAAGAGTACATAGTCCAGCAGCTGA
LOC_Os01g67730
Os.16682.2.S1_x_at--135--291Chr01:39691336..39691360 (25 bp)
ATAGTCCAGCAGCTGACAGCAAAAT
LOC_Os01g67730
Os.16682.2.S1_x_at--311--10151NONE
TATCAGTATCTGGTGAGAAGGTTAT
NONE
Os.16682.2.S1_x_at--254--5311Chr01:39691717..39691739 (23 bp)
GAAGGTTATATTTGGGCGACGGTAT
LOC_Os01g67730
Os.16682.2.S1_x_at--835--10811Chr01:39691726..39691750 (25 bp)
TTGGGCGACGGTATGTTGGAATAAT
LOC_Os01g67730
Target Sequence 
CGCGCCTGACGAAGCTTGCGCTGCACCCGCCCAGATCGGTGGAGGTTGAATTCACTGATGGTAGCTCATTCCATCTGTCA
GCTGAATTTCTAAGAGTACATAGTCCAGCAGCTGACAGCAAAATAATATCAGTATCTGGTGAGAAGGTTATATTTGGGCG
ACGGTATGTTGGAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16682.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis