Browse Element(s) Details


OsAffx.21785.2.S1_at

Description tigr:9629.m06731
TID=OsAffx.21785.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g677109/11hypothetical protein
LOC_Os07g088901/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67670OsAffx.23961.1.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67670OsAffx.23961.2.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67680OsAffx.21787.3.S1_at3/111+39655654..39656466hypothetical protein
LOC_Os01g67690NANA1+39663660..39668006retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g67700OsAffx.23962.1.S1_at11/111+39672282..39672935hypothetical protein
LOC_Os01g67710OsAffx.21785.2.S1_at9/111+39676432..39678264hypothetical protein
LOC_Os01g67710OsAffx.21785.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67710Os.53962.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67720Os.37837.1.A1_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.2.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.1.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67730Os.16682.2.S1_x_at9/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67730Os.16682.1.S1_at8/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67740Os.48518.1.S1_at11/111+39692769..39701077SMC proteins Flexible Hinge Domain containing protein, expressed
LOC_Os01g67750Os.49959.1.S1_at11/111+39701785..39706394expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21785.2.S1_at--772--9511NONE
TCTCTGGTGGATCCGGTCACTGCAA
NONE
OsAffx.21785.2.S1_at--259--8572Chr07:4617302..4617696 (25 bp)
TGGATCCGGTCACTGCAACCACTAG
LOC_Os07g08890
OsAffx.21785.2.S1_at--37--9891Chr01:39676616..39676640 (25 bp)
TACATGCCCTTTCACCTCATTCTAT
LOC_Os01g67710
OsAffx.21785.2.S1_at--597--10331Chr01:39676607..39676631 (25 bp)
TTTCACCTCATTCTATCTCTATTCT
LOC_Os01g67710
OsAffx.21785.2.S1_at--1021--111Chr01:39676598..39676622 (25 bp)
ATTCTATCTCTATTCTCTACTGTTC
LOC_Os01g67710
OsAffx.21785.2.S1_at--33--9531Chr01:39676585..39676609 (25 bp)
TCTCTACTGTTCTCCTTCTGTCTTT
LOC_Os01g67710
OsAffx.21785.2.S1_at--765--9471Chr01:39676569..39676593 (25 bp)
TCTGTCTTTCCGTCGGCAACTGGAA
LOC_Os01g67710
OsAffx.21785.2.S1_at--1121--9271Chr01:39676561..39676585 (25 bp)
TCCGTCGGCAACTGGAACTCCATTG
LOC_Os01g67710
OsAffx.21785.2.S1_at--128--8171Chr01:39676548..39676572 (25 bp)
GGAACTCCATTGACGGCCAGAGGCG
LOC_Os01g67710
OsAffx.21785.2.S1_at--58--10331Chr01:39676494..39676518 (25 bp)
TTTCTTCAGCCATTAGATCTCGGTG
LOC_Os01g67710
OsAffx.21785.2.S1_at--722--10031Chr01:39676481..39676505 (25 bp)
TAGATCTCGGTGACACGCGCATGGG
LOC_Os01g67710
Target Sequence 
TCTCTGGTGGATCCGGTCACTGCAACCACTAGGCTACATGCCCTTTCACCTCATTCTATCTCTATTCTCTACTGTTCTCC
TTCTGTCTTTCCGTCGGCAACTGGAACTCCATTGACGGCCAGAGGCGGTGGGGTGCTTGGGGTTGGAGCAGAGGTTTTTC
TTCAGCCATTAGATCTCGGTGACACGCGCATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21785.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis