Browse Element(s) Details


OsAffx.21785.1.S1_at

Description gb:NM_190337.1
DB_XREF= gi:34907757
GEN=B1065G12.31
TID=OsAffx.21785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1065G12.31 (B1065G12.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g677101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67670OsAffx.23961.1.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67670OsAffx.23961.2.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67680OsAffx.21787.3.S1_at3/111+39655654..39656466hypothetical protein
LOC_Os01g67690NANA1+39663660..39668006retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g67700OsAffx.23962.1.S1_at11/111+39672282..39672935hypothetical protein
LOC_Os01g67710OsAffx.21785.2.S1_at9/111+39676432..39678264hypothetical protein
LOC_Os01g67710OsAffx.21785.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67710Os.53962.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67720Os.37837.1.A1_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.2.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.1.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67730Os.16682.2.S1_x_at9/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67730Os.16682.1.S1_at8/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67740Os.48518.1.S1_at11/111+39692769..39701077SMC proteins Flexible Hinge Domain containing protein, expressed
LOC_Os01g67750Os.49959.1.S1_at11/111+39701785..39706394expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21785.1.S1_at--41--8191Chr01:39678576..39678600 (25 bp)
GGAAGCCAGCATGAATAAGCACACT
NONE
OsAffx.21785.1.S1_at--434--3311Chr01:39678557..39678581 (25 bp)
CACACTGTAGTGATGCATAGCATGG
NONE
OsAffx.21785.1.S1_at--1045--4991Chr01:39678538..39678562 (25 bp)
GCATGGATTGCTTGAGCGAGGCCAA
NONE
OsAffx.21785.1.S1_at--279--5892Chr11:10835528..10835550 (23 bp)
GAGCGAGGCCAAGTTCAATCTAGAA
NONE
OsAffx.21785.1.S1_at--254--3192Chr11:10835513..10835537 (25 bp)
CAATCTAGAAGAGTATGGCCTGACT
NONE
OsAffx.21785.1.S1_at--149--1351Chr01:39678501..39678525 (25 bp)
AGAGTATGGCCTGACTATTCTAAAG
NONE
OsAffx.21785.1.S1_at--849--5691Chr01:39678489..39678513 (25 bp)
GACTATTCTAAAGGATTGTGCGATA
NONE
OsAffx.21785.1.S1_at--840--6591Chr01:39678476..39678500 (25 bp)
GATTGTGCGATAGTATTGCGGGATA
NONE
OsAffx.21785.1.S1_at--729--1191Chr01:39678102..39678489 (25 bp)
AGTATTGCGGGATACCGAGGTTCTT
NONE
OsAffx.21785.1.S1_at--782--9091Chr01:39678097..39678484 (25 bp)
TGCGGGATACCGAGGTTCTTGTGTT
NONE
OsAffx.21785.1.S1_at--329--7952Chr08:27529779..27529798 (20 bp)
GGATATTTTTTACCCGGCATCTACA
NONE
Target Sequence 
GGAAGCCAGCATGAATAAGCACACTGTAGTGATGCATAGCATGGATTGCTTGAGCGAGGCCAAGTTCAATCTAGAAGAGT
ATGGCCTGACTATTCTAAAGGATTGTGCGATAGTATTGCGGGATACCGAGGTTCTTGTGTTGGTATTGCGAAGATTGGAA
ACAGCCGTGAAATATCAGTCACCCTTTTCTGTCTTCTCTGGAGCCATGCTGAACATGGTGCTGGTGTTTCACCTGTTGTT
CGTCGTTAACACCGAAGAGCACAAGTCTACTCTCTTTGTTAGCGTGGCTGGATTTGTTTTGGATACGGTGTATCTGTTCC
TCCTGGGACTCCGGAAGAGTTCTCAAAAATTTCGTTGCGTGGGATTATTTCTGATGGTTATCTCGATGTTCCTGTTCTTT
GTGTGCTCCCCCATTCTTATCTATCTGATAGATCTACATTTTCACGTCAGTAAGGAACAACCCTTGGGTGCGCTAATGTA
CGTCATGACAGTTTTGACTGTTATTACAGCAGGCTGTAGTTCTCTGGTGGATCCGAGAGAAGGATATTTTTTACCCGGCA
TCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis