Browse Element(s) Details


OsAffx.23962.1.S1_at

Description tigr:9629.m06730
TID=OsAffx.23962.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6770011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67650OsAffx.23961.1.S1_s_at11/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67650OsAffx.23961.2.S1_s_at8/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67660OsAffx.9591.1.S1_x_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.9591.1.S1_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.21787.3.S1_at10/111+39648542..39650049hypothetical protein
LOC_Os01g67670OsAffx.23961.1.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67670OsAffx.23961.2.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67680OsAffx.21787.3.S1_at3/111+39655654..39656466hypothetical protein
LOC_Os01g67690NANA1+39663660..39668006retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g67700OsAffx.23962.1.S1_at11/111+39672282..39672935hypothetical protein
LOC_Os01g67710OsAffx.21785.2.S1_at9/111+39676432..39678264hypothetical protein
LOC_Os01g67710OsAffx.21785.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67710Os.53962.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67720Os.37837.1.A1_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.2.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.1.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67730Os.16682.2.S1_x_at9/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67730Os.16682.1.S1_at8/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67740Os.48518.1.S1_at11/111+39692769..39701077SMC proteins Flexible Hinge Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23962.1.S1_at--871--5091Chr01:39672415..39672439 (25 bp)
GCACGCGAGCGAAGGCCCTGGTGGG
LOC_Os01g67700
OsAffx.23962.1.S1_at--101--1051Chr01:39672458..39672482 (25 bp)
AGGTGCAGGCCTACAAGCGGTTGTC
LOC_Os01g67700
OsAffx.23962.1.S1_at--176--7331Chr01:39672460..39672484 (25 bp)
GTGCAGGCCTACAAGCGGTTGTCCC
LOC_Os01g67700
OsAffx.23962.1.S1_at--371--2951Chr01:39672709..39672733 (25 bp)
AAGGCGGAGCCGACAACGCAGCCAC
LOC_Os01g67700
OsAffx.23962.1.S1_at--109--2951Chr01:39672745..39672769 (25 bp)
AAGGCGGCCTGCTCAGAGTCCAGAG
LOC_Os01g67700
OsAffx.23962.1.S1_at--318--2311Chr01:39672786..39672810 (25 bp)
AAAGGAGAGGCTGGCTTGCTTAAGT
LOC_Os01g67700
OsAffx.23962.1.S1_at--724--1311Chr01:39672791..39672815 (25 bp)
AGAGGCTGGCTTGCTTAAGTGGCCT
LOC_Os01g67700
OsAffx.23962.1.S1_at--350--3911Chr01:39672796..39672820 (25 bp)
CTGGCTTGCTTAAGTGGCCTCCTGA
LOC_Os01g67700
OsAffx.23962.1.S1_at--611--3351Chr01:39672843..39672867 (25 bp)
CACGCTGATTTAGTCGTCACGTCGA
LOC_Os01g67700
OsAffx.23962.1.S1_at--1097--4731Chr01:39672846..39672870 (25 bp)
GCTGATTTAGTCGTCACGTCGAATA
LOC_Os01g67700
OsAffx.23962.1.S1_at--424--10032Chr09:9218425..9218444 (20 bp)
TAGTCGTCACGTCGAATAAAACCGG
NONE
Target Sequence 
GCACGCGAGCGAAGGCCCTGGTGGGAGTAGGGAGACGAGCAGCAGGTGCAGGCCTACAAGCGGTTGTCCCCGAGGCCCGA
GGTGGCGAGCGGCGGCGCGCATGGCGCCGCCGTGGACTCGTGGCCACCCTCCGCAACATCGTCCGCCGCCCTCTCGCCTT
CCCCTCCGCCTCCGGCTCGTGCGGCCCCGCCGACGCCGACGCGTGCGCCCTCATCGCCCGCCTCCTCGCCAAGGACCCCG
CCGCCCGTTGTCCCCGGCCCCGGCGCCGCGCCGCTGCACTGGTCGCAGTCGTGCAAGGCGGAGCCGACAACGCAGCCACC
GCCGACGACGAAGGCGGCCTGCTCAGAGTCCAGAGAGGAGGAGAGGAGAAGAAAGGAGAGGCTGGCTTGCTTAAGTGGCC
TCCTGAGATGTGGGGTCCACGTGGGTCCCACGCTGATTTAGTCGTCACGTCGAATAAAACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis