Browse Element(s) Details


OsAffx.9591.1.S1_at

Description gb:NM_190330.1
DB_XREF= gi:34907743
GEN=B1065G12.24
TID=OsAffx.9591.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1065G12.24 (B1065G12.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6766011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67600OsAffx.23960.1.S1_s_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67600Os.48005.1.S1_x_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67610OsAffx.11775.1.S1_at11/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.2.S1_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.1.S1_x_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67620OsAffx.13122.2.S1_at10/111+39632362..39633060hypothetical protein
LOC_Os01g67620OsAffx.22604.1.S1_x_at1/111+39632362..39633060hypothetical protein
LOC_Os01g67630OsAffx.21788.1.S1_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.1.S1_x_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.2.S1_x_at2/111+39634312..39637150POT family protein, expressed
LOC_Os01g67640OsAffx.21788.2.S1_x_at11/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.21788.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.24785.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67650OsAffx.23961.1.S1_s_at11/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67650OsAffx.23961.2.S1_s_at8/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67660OsAffx.9591.1.S1_x_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.9591.1.S1_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.21787.3.S1_at10/111+39648542..39650049hypothetical protein
LOC_Os01g67670OsAffx.23961.1.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67670OsAffx.23961.2.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67680OsAffx.21787.3.S1_at3/111+39655654..39656466hypothetical protein
LOC_Os01g67690NANA1+39663660..39668006retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g67700OsAffx.23962.1.S1_at11/111+39672282..39672935hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9591.1.S1_at--129--7571Chr01:39649798..39649822 (25 bp)
GGGCTCAACGATGTCGCTGGCACTA
LOC_Os01g67660
OsAffx.9591.1.S1_at--652--8311Chr01:39649799..39649823 (25 bp)
GGCTCAACGATGTCGCTGGCACTAC
LOC_Os01g67660
OsAffx.9591.1.S1_at--487--9691Chr01:39649802..39649826 (25 bp)
TCAACGATGTCGCTGGCACTACTAA
LOC_Os01g67660
OsAffx.9591.1.S1_at--56--2591Chr01:39649804..39649828 (25 bp)
AACGATGTCGCTGGCACTACTAATG
LOC_Os01g67660
OsAffx.9591.1.S1_at--127--4051Chr01:39649806..39649830 (25 bp)
CGATGTCGCTGGCACTACTAATGAG
LOC_Os01g67660
OsAffx.9591.1.S1_at--60--6271Chr01:39649807..39649831 (25 bp)
GATGTCGCTGGCACTACTAATGAGG
LOC_Os01g67660
OsAffx.9591.1.S1_at--929--8711Chr01:39649809..39649833 (25 bp)
TGTCGCTGGCACTACTAATGAGGAT
LOC_Os01g67660
OsAffx.9591.1.S1_at--157--9351Chr01:39649811..39649835 (25 bp)
TCGCTGGCACTACTAATGAGGATGA
LOC_Os01g67660
OsAffx.9591.1.S1_at--811--4711Chr01:39649813..39649837 (25 bp)
GCTGGCACTACTAATGAGGATGAGG
LOC_Os01g67660
OsAffx.9591.1.S1_at--1100--6651Chr01:39649851..39649875 (25 bp)
GTTGACGTGTATGAAAAATGAAGGA
LOC_Os01g67660
OsAffx.9591.1.S1_at--323--5291Chr01:39649870..39649894 (25 bp)
GAAGGAATAGATGGTTTGTTGACGT
LOC_Os01g67660
Target Sequence 
GGGCTCAACGATGTCGCTGGCACTACTAATGAGGATGAGGGAATAGATGGTTTGTTGACGTGTATGAAAAATGAAGGAAT
AGATGGTTTGTTGACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis