Browse Element(s) Details


OsAffx.21788.2.S1_x_at

Description gb:NM_190327.1
DB_XREF= gi:34907737
GEN=B1065G12.21
TID=OsAffx.21788.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative peptide transport protein (B1065G12.21), mRNA.
PROD=putative peptide transport protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6764011/11POT family protein, expressed
LOC_Os01g676302/11POT family protein, expressed
LOC_Os06g219001/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67590Os.14090.1.S1_a_at11/111+39616212..39623444Peptidase family M3 containing protein, expressed
LOC_Os01g67600OsAffx.23960.1.S1_s_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67600Os.48005.1.S1_x_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67610OsAffx.11775.1.S1_at11/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.2.S1_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.1.S1_x_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67620OsAffx.13122.2.S1_at10/111+39632362..39633060hypothetical protein
LOC_Os01g67620OsAffx.22604.1.S1_x_at1/111+39632362..39633060hypothetical protein
LOC_Os01g67630OsAffx.21788.1.S1_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.1.S1_x_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.2.S1_x_at2/111+39634312..39637150POT family protein, expressed
LOC_Os01g67640OsAffx.21788.2.S1_x_at11/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.21788.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.24785.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67650OsAffx.23961.1.S1_s_at11/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67650OsAffx.23961.2.S1_s_at8/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67660OsAffx.9591.1.S1_x_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.9591.1.S1_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.21787.3.S1_at10/111+39648542..39650049hypothetical protein
LOC_Os01g67670OsAffx.23961.1.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67670OsAffx.23961.2.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67680OsAffx.21787.3.S1_at3/111+39655654..39656466hypothetical protein
LOC_Os01g67690NANA1+39663660..39668006retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21788.2.S1_x_at--179--1092Chr01:39641945..39641969 (25 bp)
AGGGCGACACGCTGGACCGCAGCCT
LOC_Os01g67640
OsAffx.21788.2.S1_x_at--789--1651Chr01:39641965..39641989 (25 bp)
AGCCTCGGCCGCTTCAAGGTACCCG
LOC_Os01g67640
OsAffx.21788.2.S1_x_at--512--1811Chr01:39642013..39642037 (25 bp)
ACCCTCAGCGTCATTCTCTGGGTGG
LOC_Os01g67640
OsAffx.21788.2.S1_x_at--1014--9591Chr01:39642023..39642047 (25 bp)
TCATTCTCTGGGTGGCGCTCTACGA
LOC_Os01g67640
OsAffx.21788.2.S1_x_at--49--7731Chr01:39642032..39642056 (25 bp)
GGGTGGCGCTCTACGACCGCGCCAT
LOC_Os01g67640
OsAffx.21788.2.S1_x_at--783--8931Chr01:39642077..39642101 (25 bp)
TGACGCGCCACGACGGCGGGTTCAC
LOC_Os01g67640
OsAffx.21788.2.S1_x_at--740--4672Chr01:39642092..39642116 (25 bp)
GCGGGTTCACGCAGCTGGCGCGGAT
LOC_Os01g67640
OsAffx.21788.2.S1_x_at--966--4671Chr01:39642195..39642219 (25 bp)
GCGGCCGTCGGTGTTCTGGCAGGTG
LOC_Os01g67640
OsAffx.21788.2.S1_x_at--250--7732Chr06:12657725..12657744 (20 bp)
GGTGGTGGGCGCGTCGGAGGTGTTC
LOC_Os06g21900
OsAffx.21788.2.S1_x_at--614--1051Chr01:39642248..39642272 (25 bp)
AGGTGTTCACGCTGATCGGGCAGAT
LOC_Os01g67640
OsAffx.21788.2.S1_x_at--1136--1891Chr01:39642334..39642358 (25 bp)
ACGTCGTTCGCGCTCGGCGACTACG
LOC_Os01g67640
Target Sequence 
AGGGCGACACGCTGGACCGCAGCCTCGGCCGCTTCAAGGTACCCGCCGCCGCGCTCTCCATCTTCCACACCCTCAGCGTC
ATTCTCTGGGTGGCGCTCTACGACCGCGCCATCGTGCCGCTGGCGCGCCGCGTGACGCGCCACGACGGCGGGTTCACGCA
GCTGGCGCGGATGGGCGTCGGCCTCGTCATCCTCACCGTCGCCATGGCCGCCGCCGGCGCGCTCGAGGCGGCGCGCCGCC
GGCTGATCGCGCGGCCGTCGGTGTTCTGGCAGGTGCCGCAGTACGCGGTGGTGGGCGCGTCGGAGGTGTTCACGCTGATC
GGGCAGATGGAGTTCTTCTACGACCAGGCCCCCGACGCCATGCGCAGCCTCTGCTCGGCGCTCTCCAGCACGTCGTTCGC
GCTCGGCGACTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21788.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis