Browse Element(s) Details


OsAffx.24785.1.S1_x_at

Description tigr:9630.m04737
TID=OsAffx.24785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=peptide transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4857011/11POT family protein, expressed
LOC_Os08g097701/11Luminal binding protein 5 precursor, putative
LOC_Os02g464601/11POT family protein, expressed
LOC_Os06g219001/11
LOC_Os01g676401/11POT family protein, expressed
LOC_Os05g354001/11Luminal binding protein 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48540NANA2+29708013..29709564retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g48550OsAffx.18204.2.A1_at9/112+29712310..29713694hypothetical protein
LOC_Os02g48560Os.51593.1.S1_at11/112+29719246..29724483Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
LOC_Os02g48560Os.10125.1.S1_a_at11/112+29719246..29724483Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
LOC_Os02g48570OsAffx.24785.1.S1_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.24785.1.S1_x_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.27759.1.S1_x_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570Os.22699.1.S1_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48580NANA2+29737433..29738541hypothetical protein
LOC_Os02g48590Os.5775.1.S1_at11/112+29739677..29741543expressed protein
LOC_Os02g48600OsAffx.2999.1.S1_at11/112+29746569..29747753expressed protein
LOC_Os02g48610Os.9255.1.S1_at11/112+29750142..29752721mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os02g48620Os.15634.1.S2_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620Os.15634.1.S1_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620OsAffx.9334.1.S1_at1/112+29757751..29769127tetratricopeptide repeat, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0006857biological_processoligopeptide transport
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0015833biological_processpeptide transport
GO:0005783cellular_componentendoplasmic reticulum
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0005829cellular_componentcytosol
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24785.1.S1_x_at--1048--7413Chr08:5639859..5640003 (25 bp)
GTGTTCGACATCCTCAGCGTGCTGG
LOC_Os08g09770
OsAffx.24785.1.S1_x_at--871--4651Chr02:29731204..29731228 (25 bp)
GCGTGCTGGCGTTCATCGCCATCTA
LOC_Os02g48570
OsAffx.24785.1.S1_x_at--1058--9091Chr02:29731171..29731195 (25 bp)
TGCTCGTGCCGGTCATGTCGCGCCT
LOC_Os02g48570
OsAffx.24785.1.S1_x_at--855--1671Chr02:29731018..29731042 (25 bp)
AGCCGAGCTCCCTGAGCGTGCTGTG
LOC_Os02g48570
OsAffx.24785.1.S1_x_at--1006--5013Chr01:39642213..39642264 (25 bp)
GCAGGTGCCGCAGTACGCGCTGATC
LOC_Os01g67640
OsAffx.24785.1.S1_x_at--963--8251Chr02:29730940..29730964 (25 bp)
GGCAGCTGGAGTTCTTCAACGGGCA
LOC_Os02g48570
OsAffx.24785.1.S1_x_at--1158--8072Chr06:12657806..12657830 (25 bp)
GGAGCTCGCTGTGCATGGCGTCCAT
LOC_Os06g21900
OsAffx.24785.1.S1_x_at--1156--2011Chr02:29730853..29730877 (25 bp)
ACTACGTGAGCATCATGCTGGTGAG
LOC_Os02g48570
OsAffx.24785.1.S1_x_at--1086--1531Chr02:29730845..29730869 (25 bp)
AGCATCATGCTGGTGAGCGTGGTCA
LOC_Os02g48570
OsAffx.24785.1.S1_x_at--998--8611Chr02:29730835..29730859 (25 bp)
TGGTGAGCGTGGTCACCAGCCTCAC
LOC_Os02g48570
OsAffx.24785.1.S1_x_at--626--4251Chr02:29730691..29730715 (25 bp)
CCGTGTGGTACAAGGGCATCAAGCT
LOC_Os02g48570
Target Sequence 
GTGTTCGACATCCTCAGCGTGCTGGCGTTCATCGCCATCTACCGGCGCGTGCTCGTGCCGGTCATGTCGCGCCTGTCCGG
CAACCCGCAGGGGCTGACCGAGCTGCAGCGGATGGGCGTGGGGCTCGTGGTCGGCATGGCGGCCATGGTGGTCGCCGGCG
TGGTGGAGGTGGAGCGGCTGAAGCGGGTGGGCGCGCCGGACCAGCCGAGCTCCCTGAGCGTGCTGTGGCAGGTGCCGCAG
TACGCGCTGATCGGGGCGTCGGAGGTGTTCATGTACGTGGGGCAGCTGGAGTTCTTCAACGGGCAGGCCCCCGACGGCGT
GAAGAGCTTCGGGAGCTCGCTGTGCATGGCGTCCATCTCGCTGGGGAACTACGTGAGCATCATGCTGGTGAGCGTGGTCA
CCAGCCTCACCGCCGGCGACAGGCGGCCCGGGTGGATCCCCGGGAACCTCAACTCCGGCCACCTCGACAGGTTCTACTTC
CTCCTCGCCGCGCTCTCGCTGGTCGACCTCGCCGTGTACGTCGCGTGCGCCGTGTGGTACAAGGGCATCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24785.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis