Browse Element(s) Details


Os.15634.1.S1_at

Description gb:CB634040
DB_XREF= gi:29629029
DB_XREF=OSIIEb13E15.r
CLONE=OSIIEb13E15
TID=Os.15634.1
CNT=34
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.15634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043J17, full insert sequence
FL= gb:AK121612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4862011/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48570OsAffx.24785.1.S1_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.24785.1.S1_x_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.27759.1.S1_x_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570Os.22699.1.S1_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48580NANA2+29737433..29738541hypothetical protein
LOC_Os02g48590Os.5775.1.S1_at11/112+29739677..29741543expressed protein
LOC_Os02g48600OsAffx.2999.1.S1_at11/112+29746569..29747753expressed protein
LOC_Os02g48610Os.9255.1.S1_at11/112+29750142..29752721mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os02g48620Os.15634.1.S2_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620Os.15634.1.S1_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620OsAffx.9334.1.S1_at1/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48630Os.8768.1.S1_a_at11/112+29777479..29780221expressed protein
LOC_Os02g48640OsAffx.12554.1.S1_at11/112+29780577..29783793expressed protein
LOC_Os02g48650Os.51563.1.S1_at5/112+29786994..29787494acetyltransferase, GNAT family protein
LOC_Os02g48660Os.4746.1.S1_a_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48660Os.4746.2.S1_x_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48670Os.6386.1.S1_at10/112+29793611..29794710MSF1-like conserved region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15634.1.S1_at--255--8311Chr02:29759876..29759900 (25 bp)
GGCTTTGTTCTATCATGGGCTTAAT
LOC_Os02g48620
Os.15634.1.S1_at--513--2391Chr02:29759850..29759874 (25 bp)
AAACTGAACTTGCTCTGCGTCACAT
LOC_Os02g48620
Os.15634.1.S1_at--408--751Chr02:29759827..29759851 (25 bp)
ATGTCTCGCACGTTGCTTTTGCTAA
LOC_Os02g48620
Os.15634.1.S1_at--314--10011Chr02:29759799..29759823 (25 bp)
TAGCATCAGGTCCTAATCATCCAGA
LOC_Os02g48620
Os.15634.1.S1_at--390--411Chr02:29759784..29759808 (25 bp)
ATCATCCAGATGTTGCAGCGACTCT
LOC_Os02g48620
Os.15634.1.S1_at--921--1971Chr02:29759716..29759740 (25 bp)
ACTGCTCTTAGGTATCTTCAGGAAG
LOC_Os02g48620
Os.15634.1.S1_at--312--6211Chr02:29759675..29759699 (25 bp)
GAGGCTTCTAGGACCAGATCATATT
LOC_Os02g48620
Os.15634.1.S1_at--203--2411Chr02:29759649..29759673 (25 bp)
AAACAGCTATCTGCTATCATGCCCT
LOC_Os02g48620
Os.15634.1.S1_at--965--4531Chr02:29759629..29759653 (25 bp)
GCCCTTGCCATTGCATTCAGTTGTA
LOC_Os02g48620
Os.15634.1.S1_at--1146--6911Chr02:29759607..29759631 (25 bp)
GTATGGGTGCATTCAAACTTTCAAT
LOC_Os02g48620
Os.15634.1.S1_at--475--7091Chr02:29758412..29758436 (25 bp)
GTCAACCGATCACTTAATGCTGCAG
LOC_Os02g48620
Target Sequence 
GGCTTTGTTCTATCATGGGCTTAATCAAACTGAACTTGCTCTGCGTCACATGTCTCGCACGTTGCTTTTGCTAAGTTTAG
CATCAGGTCCTAATCATCCAGATGTTGCAGCGACTCTTATAAATGTTGCAATGATGTACCAGGATGCTGGGAATATGAGT
ACTGCTCTTAGGTATCTTCAGGAAGCACTCACAAAGAACGAGAGGCTTCTAGGACCAGATCATATTCAAACAGCTATCTG
CTATCATGCCCTTGCCATTGCATTCAGTTGTATGGGTGCATTCAAACTTTCAATTCAGCATGAAAAGAAGACCTATGATA
TACTGGTGAAACAATTGGGGAGTGATGATTCAAGGACTAAGGATGCAGAAAGTTGGTTAAATACATTTAAGTCGCGAGAA
CAGCAGGTGAATGCCCAGAAGCAAAAAGGTCAGCAGGGTACTAACCCACCTGCTAATCNNTNTTGAGTTGTTGAAGGCAA
ATCCTGATTTGGTGAGAGCACTGAAGGCAGCTGCGAAACAACCTGGTGAAGGATCAGCAAATGTCAACCGATCACTTAAT
GCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis