Browse Element(s) Details


Os.15634.1.S2_at

Description gb:AK121612.1
DB_XREF= gi:37991235
TID=Os.15634.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043J17, full insert sequence.
FL= gb:AK121612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4862011/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48570OsAffx.24785.1.S1_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.24785.1.S1_x_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.27759.1.S1_x_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570Os.22699.1.S1_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48580NANA2+29737433..29738541hypothetical protein
LOC_Os02g48590Os.5775.1.S1_at11/112+29739677..29741543expressed protein
LOC_Os02g48600OsAffx.2999.1.S1_at11/112+29746569..29747753expressed protein
LOC_Os02g48610Os.9255.1.S1_at11/112+29750142..29752721mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os02g48620Os.15634.1.S2_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620Os.15634.1.S1_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620OsAffx.9334.1.S1_at1/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48630Os.8768.1.S1_a_at11/112+29777479..29780221expressed protein
LOC_Os02g48640OsAffx.12554.1.S1_at11/112+29780577..29783793expressed protein
LOC_Os02g48650Os.51563.1.S1_at5/112+29786994..29787494acetyltransferase, GNAT family protein
LOC_Os02g48660Os.4746.1.S1_a_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48660Os.4746.2.S1_x_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48670Os.6386.1.S1_at10/112+29793611..29794710MSF1-like conserved region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15634.1.S2_at--52--9211Chr02:29758305..29758329 (25 bp)
TGCCAGAGGCCTTAATGTGCGAAGC
LOC_Os02g48620
Os.15634.1.S2_at--628--8271Chr02:29758279..29758303 (25 bp)
GGCAGGCGCCTGATTACATGTCTAA
LOC_Os02g48620
Os.15634.1.S2_at--157--2251Chr02:29758246..29758270 (25 bp)
AAATTCTCAACTATCTGGGCTCGGC
LOC_Os02g48620
Os.15634.1.S2_at--430--2951Chr02:29758220..29758244 (25 bp)
AAGGCGCCTACTGCTTCTGGTAGCA
LOC_Os02g48620
Os.15634.1.S2_at--391--4851Chr02:29758169..29758193 (25 bp)
GCTACTGCCAGCACTCAAAATGCAT
LOC_Os02g48620
Os.15634.1.S2_at--1084--4971Chr02:29758103..29758127 (25 bp)
GCAGGGAATACCAACGGGCCATCGT
LOC_Os02g48620
Os.15634.1.S2_at--635--7551Chr02:29758088..29758112 (25 bp)
GGGCCATCGTCTAAAAAGTCCGGTG
LOC_Os02g48620
Os.15634.1.S2_at--501--3971Chr02:29758068..29758092 (25 bp)
CGGTGGTTCCACACCAGTAGGATTA
LOC_Os02g48620
Os.15634.1.S2_at--299--7731Chr02:29757947..29757971 (25 bp)
GGTGCTTTGAGTTTTTTACCCACAT
LOC_Os02g48620
Os.15634.1.S2_at--289--2091Chr02:29757926..29757950 (25 bp)
ACATAGAATTGTCACGCCAGCATGG
LOC_Os02g48620
Os.15634.1.S2_at--783--2351Chr02:29757753..29757777 (25 bp)
AAAGCTGAGTCAAGTTCGTTCGTTC
LOC_Os02g48620
Target Sequence 
TGCCAGAGGCCTTAATGTGCGAAGCGGGCAGGCGCCTGATTACATGTCTAATCTATCTCAAATTCTCAACTATCTGGGCT
CGGCGAAGGCGCCTACTGCTTCTGGTAGCACTCCAGCCACTGCCGCNTGCTACTTCCGCTACTGCCAGCACTCAAAATGC
ATNCTGAAGGTCAGCAATCGAATGGACCCCCACAAAACGGCACTGCAGGGAATACCAACGGGCCATCGTCTAAAAAGTCC
GGTGGTTCCACACCAGTAGGATTAGGGACTTCCTTGGAGTTGAAGAAGCAGAAATCAAAGCAGAAGTCATAGAAAGTAAC
ATCAGTGGTAGGTTTATTTCCAACAATTTTGGAATTNTAGGGTGCTTTGAGTTTTTTACCCACATAGAATTGTCACGCCA
GCATGGTGGCAGAGTAATTTTGTTTGTTTTTTTTGNAGGGGTTCTTAGGATGAGTTCAATAATAACAAACGAGAATGAAG
TGAAACAATTGTTGTGACATTGATAGACTACTGATGATGAGATAAAATGACTAAGCATTCTGCCTTCACACCAGAAAGCT
GAGTCAAGTTCGTTCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15634.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis