Browse Element(s) Details


Os.51563.1.S1_at

Description gb:AK063075.1
DB_XREF= gi:32973093
TID=Os.51563.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-H08, full insert sequence.
FL= gb:AK063075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g486505/11acetyltransferase, GNAT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48620Os.15634.1.S2_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620Os.15634.1.S1_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620OsAffx.9334.1.S1_at1/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48630Os.8768.1.S1_a_at11/112+29777479..29780221expressed protein
LOC_Os02g48640OsAffx.12554.1.S1_at11/112+29780577..29783793expressed protein
LOC_Os02g48650Os.51563.1.S1_at5/112+29786994..29787494acetyltransferase, GNAT family protein
LOC_Os02g48660Os.4746.1.S1_a_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48660Os.4746.2.S1_x_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48670Os.6386.1.S1_at10/112+29793611..29794710MSF1-like conserved region family protein, expressed
LOC_Os02g48680Os.20168.1.S1_at11/112+29794850..29795810expressed protein
LOC_Os02g48680OsAffx.24787.1.S1_at1/112+29794850..29795810expressed protein
LOC_Os02g48690OsAffx.3000.1.S1_at11/112+29799417..29802234expressed protein
LOC_Os02g48700OsAffx.24788.1.S1_at11/112+29803773..29804156hypothetical protein
LOC_Os02g48710NANA2+29807417..29807626expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51563.1.S1_at--113--5971Chr02:29787087..29787111 (25 bp)
GAGAAGGGATTCGTGGCCCTCCTCT
LOC_Os02g48650
Os.51563.1.S1_at--960--9131Chr02:29787361..29787385 (25 bp)
TGCGTCGCCTCGTGGAGATCGCCAA
LOC_Os02g48650
Os.51563.1.S1_at--963--4251Chr02:29787391..29787415 (25 bp)
CCGGATGCTACAAGGTCATCCTCGA
LOC_Os02g48650
Os.51563.1.S1_at--583--1831Chr02:29787431..29787455 (25 bp)
ACGCGCGTACTATGCCAAGTGCGGA
LOC_Os02g48650
Os.51563.1.S1_at--1109--7671Chr02:29787469..29787493 (25 bp)
GGGTTCAGATGGCAATCTACTTCTG
LOC_Os02g48650
Os.51563.1.S1_at--651--7331Chr02:29787521..29787545 (25 bp)
GTGCATTTCAATGTTTCATCTTGTC
NONE
Os.51563.1.S1_at--754--9571Chr02:29787539..29787563 (25 bp)
TCTTGTCATGACATTACGCTGTAGT
NONE
Os.51563.1.S1_at--440--3591Chr02:29787595..29787619 (25 bp)
CATTATTTTGTACTTGTTTCCGATT
NONE
Os.51563.1.S1_at--406--6831Chr02:29787610..29787634 (25 bp)
GTTTCCGATTGAGAGTTCTACTTGT
NONE
Os.51563.1.S1_at--1134--2031Chr02:29787644..29787668 (25 bp)
ACTTTGGTGATATGTTGCGTGATTA
NONE
Os.51563.1.S1_at--1104--4651Chr02:29787660..29787684 (25 bp)
GCGTGATTAGCTGTGATTTTGCCAT
NONE
Target Sequence 
GAGAAGGGATTCGTGGCCCTCCTCTCGCAGCTCTCCGCCTGCCCGGACCTCACCGCGTCCGAGTTCGCCGCGTGCTTCGC
CGACCTCGCGGCCCTCGGCGACGACCACGTCATCCTCGTGGCCGAGGACCCCGCCGCCCCGGAGAGTCGGATCCTCGCCA
CGGGGTGCCTCTTCGTGGAGCGCAAGTTCCTGCGCGGCGGCGGGAAGGTGGGGCACGTGGAGGACGTCGTGGTCGACGCC
GCCGCGCGCGGCCGCGGGCTCGGGCTCCGCGTCGTGCGTCGCCTCGTGGAGATCGCCAAGGAGGCCGGATGCTACAAGGT
CATCCTCGACTGCACGCCCGAGCTACGCGCGTACTATGCCAAGTGCGGATTCGTGGAGAAGGGGGTTCAGATGGCAATCT
ACTTCTGAATTCTGATCCATAGGTATATGTAATTGTGCATTTCAATGTTTCATCTTGTCATGACATTACGCTGTAGTTAT
TATGATTAAATTTTGGAGTACTTGATTTCATTATTTTGTACTTGTTTCCGATTGAGAGTTCTACTTGTAGAACGACAACT
TTGGTGATATGTTGCGTGATTAGCTGTGATTTTGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis