Browse Element(s) Details


OsAffx.9334.1.S1_at

Description gb:NM_191837.1
DB_XREF= gi:34910757
GEN=P0042A10.8
TID=OsAffx.9334.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0042A10.8 (P0042A10.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g486201/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48570OsAffx.24785.1.S1_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.24785.1.S1_x_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.27759.1.S1_x_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570Os.22699.1.S1_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48580NANA2+29737433..29738541hypothetical protein
LOC_Os02g48590Os.5775.1.S1_at11/112+29739677..29741543expressed protein
LOC_Os02g48600OsAffx.2999.1.S1_at11/112+29746569..29747753expressed protein
LOC_Os02g48610Os.9255.1.S1_at11/112+29750142..29752721mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os02g48620Os.15634.1.S2_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620Os.15634.1.S1_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620OsAffx.9334.1.S1_at1/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48630Os.8768.1.S1_a_at11/112+29777479..29780221expressed protein
LOC_Os02g48640OsAffx.12554.1.S1_at11/112+29780577..29783793expressed protein
LOC_Os02g48650Os.51563.1.S1_at5/112+29786994..29787494acetyltransferase, GNAT family protein
LOC_Os02g48660Os.4746.1.S1_a_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48660Os.4746.2.S1_x_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48670Os.6386.1.S1_at10/112+29793611..29794710MSF1-like conserved region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9334.1.S1_at--926--2451Chr01:30591490..30591514 (25 bp)
AACAAGTGGATGTACTCTGTGCCTA
NONE
OsAffx.9334.1.S1_at--664--3212Chr02:29763694..29763713 (20 bp)
CAAGTGGATGTACTCTGTGCCTATC
LOC_Os02g48620
OsAffx.9334.1.S1_at--909--7071Chr01:30591456..30591480 (25 bp)
GTAATTCGATCAACATTATCCATTT
NONE
OsAffx.9334.1.S1_at--573--2511Chr01:30591445..30591469 (25 bp)
AACATTATCCATTTTAACGAGTGCA
NONE
OsAffx.9334.1.S1_at--675--3571Chr01:30591436..30591460 (25 bp)
CATTTTAACGAGTGCAAGCGGCGCT
NONE
OsAffx.9334.1.S1_at--584--10331Chr01:30591433..30591457 (25 bp)
TTTAACGAGTGCAAGCGGCGCTACC
NONE
OsAffx.9334.1.S1_at--843--3231Chr01:30591422..30591446 (25 bp)
CAAGCGGCGCTACCCGGAATCCGGA
NONE
OsAffx.9334.1.S1_at--466--4851Chr01:30591414..30591438 (25 bp)
GCTACCCGGAATCCGGATGCGCGCA
NONE
OsAffx.9334.1.S1_at--87--7991Chr01:30591400..30591424 (25 bp)
GGATGCGCGCAGGTAGCTTGCAACA
NONE
OsAffx.9334.1.S1_at--487--611Chr01:30591398..30591422 (25 bp)
ATGCGCGCAGGTAGCTTGCAACACC
NONE
OsAffx.9334.1.S1_at--1092--4571Chr01:30591394..30591418 (25 bp)
GCGCAGGTAGCTTGCAACACCGAAA
NONE
Target Sequence 
AACAAGTGGATGTACTCTGTGCCTATCAAAACAAGTAATTCGATCAACATTATCCATTTTAACGAGTGCAAGCGGCGCTA
CCCGGAATCCGGATGCGCGCAGGTAGCTTGCAACACCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis