Browse Element(s) Details


OsAffx.2999.1.S1_at

Description tigr:9630.m04739
TID=OsAffx.2999.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4860011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48560Os.51593.1.S1_at11/112+29719246..29724483Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
LOC_Os02g48560Os.10125.1.S1_a_at11/112+29719246..29724483Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
LOC_Os02g48570OsAffx.24785.1.S1_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.24785.1.S1_x_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.27759.1.S1_x_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570Os.22699.1.S1_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48580NANA2+29737433..29738541hypothetical protein
LOC_Os02g48590Os.5775.1.S1_at11/112+29739677..29741543expressed protein
LOC_Os02g48600OsAffx.2999.1.S1_at11/112+29746569..29747753expressed protein
LOC_Os02g48610Os.9255.1.S1_at11/112+29750142..29752721mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os02g48620Os.15634.1.S2_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620Os.15634.1.S1_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620OsAffx.9334.1.S1_at1/112+29757751..29769127tetratricopeptide repeat, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2999.1.S1_at--609--2571Chr02:29747357..29747381 (25 bp)
AACGATTGTCCGGAGCCATGAAGAC
LOC_Os02g48600
OsAffx.2999.1.S1_at--466--8991Chr02:29747375..29747399 (25 bp)
TGAAGACAAAGGAAGCGGCGCTGAA
LOC_Os02g48600
OsAffx.2999.1.S1_at--707--8391Chr02:29747391..29747415 (25 bp)
GGCGCTGAAGAAGCTATGCCTGCAA
LOC_Os02g48600
OsAffx.2999.1.S1_at--845--4391Chr02:29747432..29747456 (25 bp)
GCCACAAAAGCGCTTCGCCGATAAG
LOC_Os02g48600
OsAffx.2999.1.S1_at--153--4571Chr02:29747441..29747465 (25 bp)
GCGCTTCGCCGATAAGATTGATCAA
LOC_Os02g48600
OsAffx.2999.1.S1_at--669--4751Chr02:29747531..29747555 (25 bp)
GCTGAAGGCATCAAGGCTAGACAAG
LOC_Os02g48600
OsAffx.2999.1.S1_at--1023--5551Chr02:29747604..29747628 (25 bp)
GAAAGCTCCAATCTTGTCCTGGAAG
LOC_Os02g48600
OsAffx.2999.1.S1_at--1112--6011Chr02:29747628..29747652 (25 bp)
GAGAGTAATTCCAGTGTTCGATCAA
LOC_Os02g48600
OsAffx.2999.1.S1_at--258--91Chr02:29747635..29747659 (25 bp)
ATTCCAGTGTTCGATCAAGCAGTGA
LOC_Os02g48600
OsAffx.2999.1.S1_at--329--10091Chr02:29747669..29747693 (25 bp)
TAGGACTAATGGATTCAGGCAGATT
LOC_Os02g48600
OsAffx.2999.1.S1_at--969--8251Chr02:29747686..29747710 (25 bp)
GGCAGATTGGAAGCCGGCGCAAAAA
LOC_Os02g48600
Target Sequence 
AACGATTGTCCGGAGCCATGAAGACAAAGGAAGCGGCGCTGAAGAAGCTATGCCTGCAAGAAAGAGGAGGGGAAGGCCAC
AAAAGCGCTTCGCCGATAAGATTGATCAAGTAGATGTGGAAAATTTTGTAGACAATGTAATTGATGGCGAAGAAGTAGAA
GGTGATGATGTTAAGCTGAAGGCATCAAGGCTAGACAAGAACACCACTGCATCTGCTGCTGGTAACAAGAGAGGCAGGCA
GCTGAAAGAAAGCTCCAATCTTGTCCTGGAAGAGAGTAATTCCAGTGTTCGATCAAGCAGTGATGAATCAACTAGGACTA
ATGGATTCAGGCAGATTGGAAGCCGGCGCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis