Browse Element(s) Details


Os.9255.1.S1_at

Description gb:AK065836.1
DB_XREF= gi:32975854
TID=Os.9255.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013037P14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037P14, full insert sequence.
FL= gb:AK065836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4861011/11mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48570OsAffx.24785.1.S1_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.24785.1.S1_x_at11/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570OsAffx.27759.1.S1_x_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48570Os.22699.1.S1_at1/112+29730645..29733298POT family protein, expressed
LOC_Os02g48580NANA2+29737433..29738541hypothetical protein
LOC_Os02g48590Os.5775.1.S1_at11/112+29739677..29741543expressed protein
LOC_Os02g48600OsAffx.2999.1.S1_at11/112+29746569..29747753expressed protein
LOC_Os02g48610Os.9255.1.S1_at11/112+29750142..29752721mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os02g48620Os.15634.1.S2_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620Os.15634.1.S1_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620OsAffx.9334.1.S1_at1/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48630Os.8768.1.S1_a_at11/112+29777479..29780221expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0005739cellular_componentmitochondrion
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9255.1.S1_at--313--8111Chr02:29750618..29750642 (25 bp)
GGACGCTCAAGATGTGCGGCAGCTA
LOC_Os02g48610
Os.9255.1.S1_at--599--8291Chr02:29752343..29752367 (25 bp)
GGCTTTTACATCTGCTGCGCTGGAC
LOC_Os02g48610
Os.9255.1.S1_at--1135--1331Chr02:29752403..29752427 (25 bp)
AGAGTACTATCCCTACACAGTCGAG
LOC_Os02g48610
Os.9255.1.S1_at--791--9791Chr02:29752430..29752454 (25 bp)
TAAGCCCGCTCATTGACTGAAGTTC
LOC_Os02g48610
Os.9255.1.S1_at--251--2831Chr02:29752449..29752473 (25 bp)
AAGTTCTGTACGTGTAGCCCAAGTC
LOC_Os02g48610
Os.9255.1.S1_at--491--4751Chr02:29752505..29752529 (25 bp)
GCTGATGCTTACTTTCATGTCTGTT
LOC_Os02g48610
Os.9255.1.S1_at--970--6271Chr02:29752535..29752559 (25 bp)
GATGTACTAGCTCCTTTGCAAATCC
LOC_Os02g48610
Os.9255.1.S1_at--1151--2271Chr02:29752554..29752578 (25 bp)
AAATCCTTGGCATTGTTGTGCTCGA
LOC_Os02g48610
Os.9255.1.S1_at--990--10391Chr02:29752612..29752636 (25 bp)
TTTTGCTTGCTTTATCGTGATCATC
LOC_Os02g48610
Os.9255.1.S1_at--335--351Chr02:29752644..29752668 (25 bp)
ATAAACGCCTTCACGATGCTTGAAA
LOC_Os02g48610
Os.9255.1.S1_at--269--6811Chr02:29752675..29752699 (25 bp)
GTTTTGCTTGCTTTCTCATGATCAT
LOC_Os02g48610
Target Sequence 
GGACGCTCAAGATGTGCGGCAGCTACGGGGCCACGTTCGCCGCCGTCGGGGGCCTCTACATCGGCGTCGAGCAGCTCGTG
CNTGAGCCAGCGCAAGAAGAACGACTACGTCAACGGGGCCGTCGGCGCCTTCGTCGCCGGCGCCACCATATTCGGCTACA
AAGGAAGGAGCATCCCTTCTGCGCTCATAGCTGGTTCTTNNCNCNNGGCTTTTACATCTGCTGCGCTGGACGTTGGCGGC
AACACTACCAGAGTGGACAATGGCAAAGAGTACTATCCCTACACAGTCGAGAATAAGCCCGCTCATTGACTGAAGTTCTG
TACGTGTAGCCCAAGTCCTGCAAAACCGTCAGCTCGGTGAATTTTGAAGCTGATGCTTACTTTCATGTCTGTTTTGTTGA
TGTACTAGCTCCTTTGCAAATCCTTGGCATTGTTGTGCTCGAGAGAGACCTATACAACAGTCTCGGAATAAATATTTTTG
CTTGCTTTATCGTGATCATCGATCACAATAAACGCCTTCACGATGCTTGAAACATCTGGTTTTGCTTGCTTTCTCATGAT
CAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis