Browse Element(s) Details


OsAffx.27759.1.S1_x_at

Description tigr:9634.m02145
TID=OsAffx.27759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=POT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2190011/11
LOC_Os02g485701/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21870OsAffx.27758.1.S1_at11/116+12631336..12631924hypothetical protein
LOC_Os06g21880OsAffx.15545.1.S1_at11/116+12644826..12647128hypothetical protein
LOC_Os06g21880Os.55031.1.S1_at1/116+12644826..12647128hypothetical protein
LOC_Os06g21890Os.56207.1.A1_x_at11/116+12650281..12651637expressed protein
LOC_Os06g21890Os.56207.1.A1_at11/116+12650281..12651637expressed protein
LOC_Os06g21900OsAffx.27759.1.S1_at11/116+12654635..12659294NA
LOC_Os06g21900OsAffx.27759.1.S1_x_at11/116+12654635..12659294NA
LOC_Os06g21900OsAffx.21788.2.S1_x_at1/116+12654635..12659294NA
LOC_Os06g21900OsAffx.24785.1.S1_x_at1/116+12654635..12659294NA
LOC_Os06g21910Os.49639.1.S1_at11/116+12664606..12665204Late embryogenesis abundant group 1 family protein, expressed
LOC_Os06g21920Os.56001.1.S1_at11/116+12679639..12680852phosphate transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27759.1.S1_x_at--1124--9411Chr06:12657605..12657629 (25 bp)
TCGTGATCGCGCTGCTCGGCATGGT
LOC_Os06g21900
OsAffx.27759.1.S1_x_at--335--4711Chr06:12657759..12657783 (25 bp)
GCTGGAGTTCTTCAACGTGCAGTCG
LOC_Os06g21900
OsAffx.27759.1.S1_x_at--1109--9551Chr06:12657767..12657791 (25 bp)
TCTTCAACGTGCAGTCGCCGGAGGG
LOC_Os06g21900
OsAffx.27759.1.S1_x_at--1157--8072Chr06:12657806..12657830 (25 bp)
GGAGCTCGCTGTGCATGGCGTCCAT
LOC_Os06g21900
OsAffx.27759.1.S1_x_at--465--4351Chr06:12657848..12657872 (25 bp)
CCAGCATGGTGATGGTGAGCGCCAT
LOC_Os06g21900
OsAffx.27759.1.S1_x_at--141--7391Chr06:12657862..12657886 (25 bp)
GTGAGCGCCATCAGCGGCGTCGCCT
LOC_Os06g21900
OsAffx.27759.1.S1_x_at--455--8691Chr06:12657980..12658004 (25 bp)
TGTCCGCCGTGGACCTCGTCGTGTT
LOC_Os06g21900
OsAffx.27759.1.S1_x_at--585--9411Chr06:12657995..12658019 (25 bp)
TCGTCGTGTTCATCGTGTTCGCGCG
LOC_Os06g21900
OsAffx.27759.1.S1_x_at--848--6731Chr06:12658002..12658026 (25 bp)
GTTCATCGTGTTCGCGCGGTTGTTC
LOC_Os06g21900
OsAffx.27759.1.S1_x_at--1085--6691Chr06:12658011..12658035 (25 bp)
GTTCGCGCGGTTGTTCAAGGGCATC
LOC_Os06g21900
OsAffx.27759.1.S1_x_at--156--4151Chr06:12658016..12658040 (25 bp)
CGCGGTTGTTCAAGGGCATCGAGCC
LOC_Os06g21900
Target Sequence 
TCGTGATCGCGCTGCTCGGCATGGTCGCCGCGGCGGTCGTCGAGGTCCACCGCCGCCGCCGATCCGGCGCCGGCGGCCGC
GCCATGAGCGTGCTGTGGCAGGCGCCGCAGTACGCGGTGATGGGCGCGTCGGAGGTGTTCGTGTACGTGGGGCAGCTGGA
GTTCTTCAACGTGCAGTCGCCGGAGGGGGTGAAGAGCCTGGGGAGCTCGCTGTGCATGGCGTCCATCTCGCTGGGGAACT
ACGCCAGCATGGTGATGGTGAGCGCCATCAGCGGCGTCGCCTCGCGGCGGCGGACCGGCGGAGGGACGGCGGGGTGGATC
CTGGCCGAGCTCGACCGCGGCCACCTCGACCGCTCCTTCATCACCCTCGCCGTGCTGTCCGCCGTGGACCTCGTCGTGTT
CATCGTGTTCGCGCGGTTGTTCAAGGGCATCGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27759.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis