Browse Element(s) Details


OsAffx.27758.1.S1_at

Description tigr:9634.m02142
TID=OsAffx.27758.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2179011/11hypothetical protein
LOC_Os06g2187011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21760NANA6+12571596..12573253SAM dependent carboxyl methyltransferase family protein
LOC_Os06g21770OsAffx.15541.1.S1_at1/116+12575858..12578369hypothetical protein
LOC_Os06g21780OsAffx.5954.1.S1_x_at3/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21780OsAffx.5954.3.S1_x_at2/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21780OsAffx.5954.5.S1_x_at2/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21790OsAffx.27758.1.S1_at11/116+12595104..12595701hypothetical protein
LOC_Os06g21800OsAffx.15540.1.S1_at11/116+12597619..12598716hypothetical protein
LOC_Os06g21810OsAffx.15541.1.S1_at11/116+12601493..12601852hypothetical protein
LOC_Os06g21820Os.26709.1.S1_at11/116+12603825..12605643SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g21830Os.26709.1.S1_at1/116+12607804..12608319Benzoate carboxyl methyltransferase, putative
LOC_Os06g21840NANA6+12614452..12615354hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27758.1.S1_at--250--9012Chr06:12631842..12631866 (25 bp)
TGCAAGGTGCAATAGACCAAACCAT
LOC_Os06g21870
OsAffx.27758.1.S1_at--232--2872Chr06:12631814..12631838 (25 bp)
AAGGGTGGAAGACTTATTTGCAAAG
LOC_Os06g21870
OsAffx.27758.1.S1_at--172--2593Chr06:12631781..12631805 (25 bp)
AACGAACTCCATTGAGCGCATGGAA
LOC_Os06g21870
OsAffx.27758.1.S1_at--18--4592Chr06:12631766..12631790 (25 bp)
GCGCATGGAAAAACGGTTGCCTACT
LOC_Os06g21870
OsAffx.27758.1.S1_at--414--5612Chr06:12631735..12631759 (25 bp)
GACAAACTTGACGATATTGACGGTC
LOC_Os06g21870
OsAffx.27758.1.S1_at--66--6512Chr06:12631723..12631747 (25 bp)
GATATTGACGGTCGTCTACCACTCC
LOC_Os06g21870
OsAffx.27758.1.S1_at--961--7132Chr06:12631710..12631734 (25 bp)
GTCTACCACTCCTTCGAGACGGTAC
LOC_Os06g21870
OsAffx.27758.1.S1_at--1077--10532Chr06:12631698..12631722 (25 bp)
TTCGAGACGGTACCCACAAACATGG
LOC_Os06g21870
OsAffx.27758.1.S1_at--46--1932Chr06:12631692..12631716 (25 bp)
ACGGTACCCACAAACATGGAGAGGT
LOC_Os06g21870
OsAffx.27758.1.S1_at--133--472Chr06:12631453..12631477 (25 bp)
AGAGAAAAAGTTTCATTCACACGTA
LOC_Os06g21870
OsAffx.27758.1.S1_at--291--10112Chr06:12631370..12631394 (25 bp)
TATGGTGGAATGGTCTATGTGAAAC
LOC_Os06g21870
Target Sequence 
TGCAAGGTGCAATAGACCAAACCATGAAAAGGGTGGAAGACTTATTTGCAAAGATNGANGNAACGAACTCCATTGAGCGC
ATGGAAAAACGGTTGCCTACTATAACNGACAAACTTGACGATATTGACGGTCGTCTACCACTCCTTCGAGACGGTACCCA
CAAACATGGAGAGGTGGTANNNNNNTACTTTGATTGGGAGATGATAGTAGAGAAAAAGTTTCATTCACACGTANTTCCTA
AGGNCTATAGAGTTAGACAANCCACTAGTGAGTTNAAGGACTTTGCAATAATATGGTGGAATGGTCTATGTGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis