Browse Element(s) Details


OsAffx.15541.1.S1_at

Description tigr:9634.m02136
TID=OsAffx.15541.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2181011/11hypothetical protein
LOC_Os06g217701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21770OsAffx.15541.1.S1_at1/116+12575858..12578369hypothetical protein
LOC_Os06g21780OsAffx.5954.1.S1_x_at3/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21780OsAffx.5954.3.S1_x_at2/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21780OsAffx.5954.5.S1_x_at2/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21790OsAffx.27758.1.S1_at11/116+12595104..12595701hypothetical protein
LOC_Os06g21800OsAffx.15540.1.S1_at11/116+12597619..12598716hypothetical protein
LOC_Os06g21810OsAffx.15541.1.S1_at11/116+12601493..12601852hypothetical protein
LOC_Os06g21820Os.26709.1.S1_at11/116+12603825..12605643SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g21830Os.26709.1.S1_at1/116+12607804..12608319Benzoate carboxyl methyltransferase, putative
LOC_Os06g21840NANA6+12614452..12615354hypothetical protein
LOC_Os06g21850NANA6+12622231..12623750hypothetical protein
LOC_Os06g21860Os.2741.4.S1_x_at6/116+12625526..12628188retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15541.1.S1_at--911--3531Chr06:12601527..12601550 (24 bp)
CATCCGCTTATGTACCTGCATGGGC
LOC_Os06g21810
OsAffx.15541.1.S1_at--264--3851Chr06:12601542..12601677 (25 bp)
CTGCATGGGCGGGTGATCATATTTT
LOC_Os06g21810
OsAffx.15541.1.S1_at--436--4091Chr06:12601585..12601609 (25 bp)
CGACGCGACTGCTCTACATCGGCTA
LOC_Os06g21810
OsAffx.15541.1.S1_at--773--9531Chr06:12601704..12601728 (25 bp)
TCTACATCGGCTACGTCTTCTGCTA
LOC_Os06g21810
OsAffx.15541.1.S1_at--119--7151Chr06:12601718..12601742 (25 bp)
GTCTTCTGCTATTCTGCATTGGCTA
LOC_Os06g21810
OsAffx.15541.1.S1_at--121--112Chr06:12601728..12601752 (25 bp)
ATTCTGCATTGGCTACGTCCTCTGG
LOC_Os06g21810
OsAffx.15541.1.S1_at--358--9471Chr06:12601748..12601772 (25 bp)
TCTGGTACATCTACTTCCTCTGTAT
LOC_Os06g21810
OsAffx.15541.1.S1_at--57--2071Chr06:12601760..12601784 (25 bp)
ACTTCCTCTGTATCAGCTGTCTACA
LOC_Os06g21810
OsAffx.15541.1.S1_at--959--6891Chr06:12601769..12601793 (25 bp)
GTATCAGCTGTCTACAACGTCTACT
LOC_Os06g21810
OsAffx.15541.1.S1_at--465--1611Chr06:12601774..12601798 (25 bp)
AGCTGTCTACAACGTCTACTTCCTC
LOC_Os06g21810
OsAffx.15541.1.S1_at--74--9891Chr06:12601790..12601814 (25 bp)
TACTTCCTCTCCATCGCAATGTCTT
LOC_Os06g21810
Target Sequence 
CATCCGCTTATGTACCTGCATGGGCGGGTGATCATATTTTTGGGGAGCATCCTTCGACGCGACTGCTCTACATCGGCTAC
GTCTTCTGCTATTCTGCATTGGCTACGTCCTCTGGTACATCTACTTCCTCTGTATCAGCTGTCTACAACGTCTACTTCCT
CTCCATCGCAATGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis