Browse Element(s) Details


OsAffx.15540.1.S1_at

Description tigr:9634.m02135
TID=OsAffx.15540.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2180011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21760NANA6+12571596..12573253SAM dependent carboxyl methyltransferase family protein
LOC_Os06g21770OsAffx.15541.1.S1_at1/116+12575858..12578369hypothetical protein
LOC_Os06g21780OsAffx.5954.1.S1_x_at3/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21780OsAffx.5954.3.S1_x_at2/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21780OsAffx.5954.5.S1_x_at2/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21790OsAffx.27758.1.S1_at11/116+12595104..12595701hypothetical protein
LOC_Os06g21800OsAffx.15540.1.S1_at11/116+12597619..12598716hypothetical protein
LOC_Os06g21810OsAffx.15541.1.S1_at11/116+12601493..12601852hypothetical protein
LOC_Os06g21820Os.26709.1.S1_at11/116+12603825..12605643SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g21830Os.26709.1.S1_at1/116+12607804..12608319Benzoate carboxyl methyltransferase, putative
LOC_Os06g21840NANA6+12614452..12615354hypothetical protein
LOC_Os06g21850NANA6+12622231..12623750hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15540.1.S1_at--976--4311Chr06:12598313..12598337 (25 bp)
CCATACAATGCGTATAACTACTACA
LOC_Os06g21800
OsAffx.15540.1.S1_at--181--2031Chr06:12598329..12598490 (25 bp)
ACTACTACAAGAAGTGTCACATGCA
LOC_Os06g21800
OsAffx.15540.1.S1_at--434--3731Chr06:12598473..12598494 (22 bp)
CTACAAGAAGTGTCACATGCAACTT
LOC_Os06g21800
OsAffx.15540.1.S1_at--555--7431Chr06:12598479..12598503 (25 bp)
GTGTCACATGCAACTTAAAGTCGGT
LOC_Os06g21800
OsAffx.15540.1.S1_at--378--651Chr06:12598486..12598510 (25 bp)
ATGCAACTTAAAGTCGGTGTCCTCT
LOC_Os06g21800
OsAffx.15540.1.S1_at--112--2031Chr06:12598491..12598515 (25 bp)
ACTTAAAGTCGGTGTCCTCTGCATT
LOC_Os06g21800
OsAffx.15540.1.S1_at--386--10491Chr06:12598493..12598517 (25 bp)
TTAAAGTCGGTGTCCTCTGCATTTA
LOC_Os06g21800
OsAffx.15540.1.S1_at--27--2331Chr06:12598495..12598519 (25 bp)
AAAGTCGGTGTCCTCTGCATTTATT
LOC_Os06g21800
OsAffx.15540.1.S1_at--638--1151Chr06:12598497..12598521 (25 bp)
AGTCGGTGTCCTCTGCATTTATTAC
LOC_Os06g21800
OsAffx.15540.1.S1_at--450--9231Chr06:12598532..12598556 (25 bp)
TCCTAAGGGTGAATGGGACGTACAC
LOC_Os06g21800
OsAffx.15540.1.S1_at--244--9011Chr06:12598541..12598565 (25 bp)
TGAATGGGACGTACACGACCAACGC
LOC_Os06g21800
Target Sequence 
CCATACAATGCGTATAACTACTACAAGAAGTGTCACATGCAACTTAAAGTCGGTGTCCTCTGCATTTATTACACATGCGA
ATTCCTAAGGGTGAATGGGACGTACACGACCAACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis