Browse Element(s) Details


Os.26709.1.S1_at

Description gb:AK100029.1
DB_XREF= gi:32985238
TID=Os.26709.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26709 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013147J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147J04, full insert sequence.
FL= gb:AK100029.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2182011/11SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g217201/11S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase, putative
LOC_Os06g218301/11Benzoate carboxyl methyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21780OsAffx.5954.1.S1_x_at3/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21780OsAffx.5954.3.S1_x_at2/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21780OsAffx.5954.5.S1_x_at2/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21790OsAffx.27758.1.S1_at11/116+12595104..12595701hypothetical protein
LOC_Os06g21800OsAffx.15540.1.S1_at11/116+12597619..12598716hypothetical protein
LOC_Os06g21810OsAffx.15541.1.S1_at11/116+12601493..12601852hypothetical protein
LOC_Os06g21820Os.26709.1.S1_at11/116+12603825..12605643SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os06g21830Os.26709.1.S1_at1/116+12607804..12608319Benzoate carboxyl methyltransferase, putative
LOC_Os06g21840NANA6+12614452..12615354hypothetical protein
LOC_Os06g21850NANA6+12622231..12623750hypothetical protein
LOC_Os06g21860Os.2741.4.S1_x_at6/116+12625526..12628188retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009694biological_processjasmonic acid metabolism
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0005737cellular_componentcytoplasm
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
GO:0030795molecular_functionjasmonate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26709.1.S1_at--172--1771Chr06:12605045..12605069 (25 bp)
ACCTGGTGGCGCCATGTTCCTAGTC
LOC_Os06g21820
Os.26709.1.S1_at--777--731Chr06:12605058..12605082 (25 bp)
ATGTTCCTAGTCTTCGTTGGCCGCC
LOC_Os06g21820
Os.26709.1.S1_at--533--10514Chr06:12605202..12605226 (25 bp)
TTCAACATCCCGTCGTACGCTGCGA
LOC_Os06g21820
Os.26709.1.S1_at--442--4091Chr06:12605258..12605282 (25 bp)
CGACGGCTCGTTCGCTGTCAACCGG
LOC_Os06g21820
Os.26709.1.S1_at--541--5013Chr06:12605353..12605377 (25 bp)
GCAGGGTGGCGAACAACCAGCGATC
LOC_Os06g21820
Os.26709.1.S1_at--405--5511Chr06:12605363..12605387 (25 bp)
GAACAACCAGCGATCGATCTTCGGG
LOC_Os06g21820
Os.26709.1.S1_at--129--1652Chr06:12608159..12608183 (25 bp)
AGCGATCGATCTTCGGGCCGCTCGT
LOC_Os06g21830
Os.26709.1.S1_at--48--9311Chr06:12605419..12605443 (25 bp)
TCGCGGACGAGCTGTTCGTCCGGAT
LOC_Os06g21820
Os.26709.1.S1_at--946--1311Chr06:12605446..12605470 (25 bp)
AGAGGCGCGCAGAAGAGCTCTCCGA
LOC_Os06g21820
Os.26709.1.S1_at--493--7671Chr06:12605491..12605515 (25 bp)
GGGTTCGCTTCCACATCTTGTGCTC
LOC_Os06g21820
Os.26709.1.S1_at--1115--3611Chr06:12605507..12605531 (25 bp)
CTTGTGCTCGCTTTCACTCGTCTAA
LOC_Os06g21820
Target Sequence 
ACCTGGTGGCGCCATGTTCCTAGTCTTCGTTGGCCGCCCGTCGTCCGCCGGCCCCACCGACCAAGGCCGCAGCCTCAACC
TGCTGGGCACCATGTTCGAGGAGTCGTGGCGTGACCTCNTCGACGAGGGGTTGATCGACGGCGGGAGGATGGACAGCTTC
AACATCCCGTCGTACGCTGCGACGCTGGAGGAGTTCAGGGAGTCCGTCGACGCCGACGGCTCGTTCGCTGTCAACCGGNT
GGAGCACGTGATGGGAGGCCGTCTCGCCGTGGACGACGACCCCCACGACGACCGCTGCGCGGTCGGGCGCAGGGTGGCGA
ACAACCAGCGATCGATCTTCGGGCCGCTCGTNGAAGCGCACATTGGCAGGGCGCTCGCGGACGAGCTGTTCGTCCGGATG
GAGAGGCGCGCAGAAGAGCTCTCCGACGAGCTTGTGNACGAGATGGGGGTTCGCTTCCACATCTTGTGCTCGCTTTCACT
CGTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis