Browse Element(s) Details


Os.56207.1.A1_x_at

Description gb:AK109614.1
DB_XREF= gi:32994823
TID=Os.56207.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.56207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-G10, full insert sequence.
FL= gb:AK109614.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2189011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21860Os.2741.4.S1_x_at6/116+12625526..12628188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21870OsAffx.27758.1.S1_at11/116+12631336..12631924hypothetical protein
LOC_Os06g21880OsAffx.15545.1.S1_at11/116+12644826..12647128hypothetical protein
LOC_Os06g21880Os.55031.1.S1_at1/116+12644826..12647128hypothetical protein
LOC_Os06g21890Os.56207.1.A1_x_at11/116+12650281..12651637expressed protein
LOC_Os06g21890Os.56207.1.A1_at11/116+12650281..12651637expressed protein
LOC_Os06g21900OsAffx.27759.1.S1_at11/116+12654635..12659294NA
LOC_Os06g21900OsAffx.27759.1.S1_x_at11/116+12654635..12659294NA
LOC_Os06g21900OsAffx.21788.2.S1_x_at1/116+12654635..12659294NA
LOC_Os06g21900OsAffx.24785.1.S1_x_at1/116+12654635..12659294NA
LOC_Os06g21910Os.49639.1.S1_at11/116+12664606..12665204Late embryogenesis abundant group 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56207.1.A1_x_at--551--2871Chr06:12650749..12650773 (25 bp)
AAGGGAGAATCCAACCTCGGCGCGG
LOC_Os06g21890
Os.56207.1.A1_x_at--353--3931Chr06:12650582..12650606 (25 bp)
CGGCCGGCTTGCTACTTGCAGAGGA
LOC_Os06g21890
Os.56207.1.A1_x_at--682--8291Chr06:12650577..12650601 (25 bp)
GGCTTGCTACTTGCAGAGGAGACAA
LOC_Os06g21890
Os.56207.1.A1_x_at--193--8954Chr03:20604526..20604549 (24 bp)
TGACGTGGCATCCTTACATGTGGGT
NONE
Os.56207.1.A1_x_at--663--7534Chr03:20604530..20604549 (20 bp)
GTGGCATCCTTACATGTGGGTCTCA
NONE
Os.56207.1.A1_x_at--178--9832Chr06:12650407..12650431 (25 bp)
TATAAGTTGGGAGATACGTTGTATC
LOC_Os06g21890
Os.56207.1.A1_x_at--858--7011Chr06:12650324..12650348 (25 bp)
GTACTTTTTCCTCTCATAAATGTGT
LOC_Os06g21890
Os.56207.1.A1_x_at--526--9251Chr06:12650316..12650340 (25 bp)
TCCTCTCATAAATGTGTGGCCCAAT
LOC_Os06g21890
Os.56207.1.A1_x_at--807--771Chr06:12650305..12650329 (25 bp)
ATGTGTGGCCCAATGATAACTGTGG
LOC_Os06g21890
Os.56207.1.A1_x_at--880--8391Chr06:12650299..12650323 (25 bp)
GGCCCAATGATAACTGTGGCGCGAA
LOC_Os06g21890
Os.56207.1.A1_x_at--249--7551Chr06:12650284..12650308 (25 bp)
GTGGCGCGAAAAAGTACGCGTGCTT
LOC_Os06g21890
Target Sequence 
AAGGGAGAATCCAACCTCGGCGCGGCGGCCTCCCCTCCAGCGTCGCAGCCTCAGCCGTCGCCGCCGCGGTGGCCTCCCCT
CCGGCGTCGTAGCCTCCGCCGTCGCCGCCGTGTCGCCCACCGCCGCTTCCTCTCCCGCCTCGCCCCGGGCGACCTCTCCA
CGCCCGCCGGCCGGCTTGCTACTTGCAGAGGAGACAAGCGAGAGAGAGAGAAGGGAGGGAGAGGAAAAGGAAGAGAGAGG
GTGCTGACGTGGCATCCTTACATGTGGGTCTCACGCTGAGTCAGCCGCCACGTCGGACAAAACCAGGCTCAAAACCGCCG
AGGGACCTAGTTTGCACGGTTTTATAAGTTGGGAGATACGTTGTATCTGGTTTTGTGGTTGGAGGACAATTTTGTAATTC
GATGACAAGTTGAGGGACCTTCGGTGTACTTTTTCCTCTCATAAATGTGTGGCCCAATGATAACTGTGGCGCGAAAAAGT
ACGCGTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56207.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis