Browse Element(s) Details


Os.55031.1.S1_at

Description gb:AK107339.1
DB_XREF= gi:32992548
TID=Os.55031.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-G01, full insert sequence.
FL= gb:AK107339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g218801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21850NANA6+12622231..12623750hypothetical protein
LOC_Os06g21860Os.2741.4.S1_x_at6/116+12625526..12628188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21870OsAffx.27758.1.S1_at11/116+12631336..12631924hypothetical protein
LOC_Os06g21880OsAffx.15545.1.S1_at11/116+12644826..12647128hypothetical protein
LOC_Os06g21880Os.55031.1.S1_at1/116+12644826..12647128hypothetical protein
LOC_Os06g21890Os.56207.1.A1_x_at11/116+12650281..12651637expressed protein
LOC_Os06g21890Os.56207.1.A1_at11/116+12650281..12651637expressed protein
LOC_Os06g21900OsAffx.27759.1.S1_at11/116+12654635..12659294NA
LOC_Os06g21900OsAffx.27759.1.S1_x_at11/116+12654635..12659294NA
LOC_Os06g21900OsAffx.21788.2.S1_x_at1/116+12654635..12659294NA
LOC_Os06g21900OsAffx.24785.1.S1_x_at1/116+12654635..12659294NA
LOC_Os06g21910Os.49639.1.S1_at11/116+12664606..12665204Late embryogenesis abundant group 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55031.1.S1_at--530--4991Chr05:2143516..2143539 (24 bp)
GCATGCTCTGCAAACCCAAGATTCG
NONE
Os.55031.1.S1_at--1093--71Chr05:2143496..2143520 (25 bp)
ATTCGCAACACCAAACTACAATCCA
NONE
Os.55031.1.S1_at--132--591Chr05:2143476..2143500 (25 bp)
ATCCACCATCCATTGCAAAGAACTC
NONE
Os.55031.1.S1_at--1150--2331Chr05:2143448..2143472 (25 bp)
AAAGCACAAGCAAACCACGATTCTT
NONE
Os.55031.1.S1_at--570--5517Chr06:15845089..15845113 (25 bp)
GAACAACGAGGTGGATCAATCAAGA
NONE
Os.55031.1.S1_at--88--2351Chr05:2143269..2143293 (25 bp)
AAAGCACACTGGCACCTTTGCTCAG
NONE
Os.55031.1.S1_at--674--5631Chr05:2143238..2143262 (25 bp)
GACACTGTCCGAATTTCTTGCTTGC
NONE
Os.55031.1.S1_at--708--91Chr05:2143139..2143163 (25 bp)
ATTCCGGGACATTTCACATGGTTTT
NONE
Os.55031.1.S1_at--136--8591Chr05:2143121..2143145 (25 bp)
TGGTTTTTCATCCTCTGCCATCACA
NONE
Os.55031.1.S1_at--217--391Chr05:2143102..2143126 (25 bp)
ATCACATTTCTCTGGTTGCTTGCCG
NONE
Os.55031.1.S1_at--271--4251Chr05:2143080..2143104 (25 bp)
CCGTCTGCTGCTGTACAGGTTTATG
NONE
Target Sequence 
GCATGCTCTGCAAACCCAAGATTCGCAACACCAAACTACAATCCACCATCCATTGCAAAGAACTCAGAAAAGCACAAGCA
AACCACGATTCTTGATCGATCTCCACCACCAATGCCTCTCAAAGAAAGCACCAATCAATCAAAGAACAACGAGGTGGATC
AATCAAGAGATGAGCTAAAGACGAAGGAGAGATGGGGATTGCGATTTGCGAGGAGAATCTAAAGAGAAAGGTGCAGAGTT
AAAAAGCAAAGCACACTGGCACCTTTGCTCAGCTACCCGACACTGTCCGAATTTCTTGCTTGCTTAATATCATAATAATA
TAATTGGAGAAATACAAAAGTTTGATCTAAATAAATAGATAAATAAAGGTGGGGAAAATTCCGGGACATTTCACATGGTT
TTTCATCCTCTGCCATCACATTTCTCTGGTTGCTTGCCGTCTGCTGCTGTACAGGTTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis