Browse Element(s) Details


Os.49639.1.S1_at

Description gb:AK063726.1
DB_XREF= gi:32973744
TID=Os.49639.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-D12, full insert sequence.
FL= gb:AK063726.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2191011/11Late embryogenesis abundant group 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21880OsAffx.15545.1.S1_at11/116+12644826..12647128hypothetical protein
LOC_Os06g21880Os.55031.1.S1_at1/116+12644826..12647128hypothetical protein
LOC_Os06g21890Os.56207.1.A1_x_at11/116+12650281..12651637expressed protein
LOC_Os06g21890Os.56207.1.A1_at11/116+12650281..12651637expressed protein
LOC_Os06g21900OsAffx.27759.1.S1_at11/116+12654635..12659294NA
LOC_Os06g21900OsAffx.27759.1.S1_x_at11/116+12654635..12659294NA
LOC_Os06g21900OsAffx.21788.2.S1_x_at1/116+12654635..12659294NA
LOC_Os06g21900OsAffx.24785.1.S1_x_at1/116+12654635..12659294NA
LOC_Os06g21910Os.49639.1.S1_at11/116+12664606..12665204Late embryogenesis abundant group 1 family protein, expressed
LOC_Os06g21920Os.56001.1.S1_at11/116+12679639..12680852phosphate transporter family protein, putative, expressed
LOC_Os06g21930OsAffx.27760.1.S1_at10/116+12685485..12686679phosphate transporter family protein, putative
LOC_Os06g21940NANA6+12689957..12690373hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49639.1.S1_at--955--8371Chr06:12665098..12665122 (25 bp)
GGCGACCATGAAAGCCAAGGCCGAG
LOC_Os06g21910
Os.49639.1.S1_at--295--4411Chr06:12664830..12664854 (25 bp)
GCCACGCTGACGAGAAGTCCGGCAA
LOC_Os06g21910
Os.49639.1.S1_at--251--5971Chr06:12664819..12664843 (25 bp)
GAGAAGTCCGGCAAGCACACCTTTA
LOC_Os06g21910
Os.49639.1.S1_at--600--1571Chr06:12664774..12664798 (25 bp)
AGCTACTAGCTAGCGAGGCACGCGT
LOC_Os06g21910
Os.49639.1.S1_at--496--4571Chr06:12664716..12664740 (25 bp)
GCGCGCTCATGACCGGCTTGAACTA
LOC_Os06g21910
Os.49639.1.S1_at--85--691Chr06:12664708..12664732 (25 bp)
ATGACCGGCTTGAACTAGCTGCACG
LOC_Os06g21910
Os.49639.1.S1_at--890--8971Chr06:12664698..12664722 (25 bp)
TGAACTAGCTGCACGCACTAGCTAC
LOC_Os06g21910
Os.49639.1.S1_at--1057--4551Chr06:12664661..12664685 (25 bp)
GCGCGCTAGCTTTGTACCAGTAATC
LOC_Os06g21910
Os.49639.1.S1_at--1014--6971Chr06:12664648..12664672 (25 bp)
GTACCAGTAATCACTAGTATGTATG
LOC_Os06g21910
Os.49639.1.S1_at--267--751Chr06:12664630..12664654 (25 bp)
ATGTATGAACTCACGTCGATCGCTT
LOC_Os06g21910
Os.49639.1.S1_at--722--1871Chr06:12664618..12664642 (25 bp)
ACGTCGATCGCTTGCAATGTGCATA
LOC_Os06g21910
Target Sequence 
GGCGACCATGAAAGCCAAGGCCGAGGACGCGNCATCCTCCGCCAAGGCCGGCGTCCACAAGGCCAAGGCCACCGCCGNCG
AGAAGGTGGAGAAGGCGACGACGGGGGACCCNNNGAAGAAGCGGGAGGCGNAGGAGCGGAAGGAGGACAGGAAGCTGGAG
GCGNAGTCNGACGAGCGCGTCGAGAAGGAGGGCCACGCTGACGAGAAGTCCGGCAAGCACACCTTTACCACCGCCACGGG
GTAGCTAAGCTACTAGCTAGCGAGGCACGCGTNCNTNNNNNNGNNNNNNNNNGGCTGGCGGCCGCGCGCGCTCATGACCG
GCTTGAACTAGCTGCACGCACTAGCTACCCGCATGACGCCGCGCGCTAGCTTTGTACCAGTAATCACTAGTATGTATGAA
CTCACGTCGATCGCTTGCAATGTGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis