Browse Element(s) Details


Os.56001.1.S1_at

Description gb:AK109109.1
DB_XREF= gi:32994318
TID=Os.56001.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-B11, full insert sequence.
FL= gb:AK109109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2192011/11phosphate transporter family protein, putative, expressed
LOC_Os06g219505/11major facilitator superfamily protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21900OsAffx.27759.1.S1_at11/116+12654635..12659294NA
LOC_Os06g21900OsAffx.27759.1.S1_x_at11/116+12654635..12659294NA
LOC_Os06g21900OsAffx.21788.2.S1_x_at1/116+12654635..12659294NA
LOC_Os06g21900OsAffx.24785.1.S1_x_at1/116+12654635..12659294NA
LOC_Os06g21910Os.49639.1.S1_at11/116+12664606..12665204Late embryogenesis abundant group 1 family protein, expressed
LOC_Os06g21920Os.56001.1.S1_at11/116+12679639..12680852phosphate transporter family protein, putative, expressed
LOC_Os06g21930OsAffx.27760.1.S1_at10/116+12685485..12686679phosphate transporter family protein, putative
LOC_Os06g21940NANA6+12689957..12690373hypothetical protein
LOC_Os06g21950Os.56001.1.S1_at5/116+12691306..12693850major facilitator superfamily protein
LOC_Os06g21950OsAffx.27760.1.S1_at1/116+12691306..12693850major facilitator superfamily protein
LOC_Os06g21960OsAffx.27761.1.S1_at11/116+12699244..12700178hypothetical protein
LOC_Os06g21970Os.50472.1.S1_at1/116+12701745..12703363retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56001.1.S1_at--93--9951Chr06:12680255..12680279 (25 bp)
TACGATGGATACTGGCGCGACCACG
LOC_Os06g21920
Os.56001.1.S1_at--393--2772Chr06:12680282..12680306 (25 bp)
AAGACCGCCGGCTACATCGTGCTCT
LOC_Os06g21920
Os.56001.1.S1_at--740--492Chr06:12680450..12680474 (25 bp)
ATCGGCTTCCTGTGGGCGTCGCAGC
LOC_Os06g21920
Os.56001.1.S1_at--103--1772Chr06:12680499..12680523 (25 bp)
ACCTGCCGGGCATCGGCATGATGTA
LOC_Os06g21920
Os.56001.1.S1_at--31--3952Chr06:12680512..12680536 (25 bp)
CGGCATGATGTACGCGCTGTTCGTT
LOC_Os06g21920
Os.56001.1.S1_at--248--4732Chr06:12680527..12680551 (25 bp)
GCTGTTCGTTCTTGGCGGGATCTGC
LOC_Os06g21920
Os.56001.1.S1_at--164--2971Chr06:12680672..12680696 (25 bp)
AATGGCAGTGATGGGCTGCGCTTCC
LOC_Os06g21920
Os.56001.1.S1_at--411--4771Chr06:12680686..12680710 (25 bp)
GCTGCGCTTCCACGAACTAAATGTT
LOC_Os06g21920
Os.56001.1.S1_at--69--2991Chr06:12680705..12680729 (25 bp)
AATGTTCTCATGGAGGCGGCGACCA
LOC_Os06g21920
Os.56001.1.S1_at--889--2771Chr06:12680729..12680753 (25 bp)
AAGAGCCCTGTGTCCATGGCGAGCT
LOC_Os06g21920
Os.56001.1.S1_at--775--10651Chr06:12680778..12680802 (25 bp)
TTCCGCACCGGATGTCTCTATGACA
LOC_Os06g21920
Target Sequence 
TACGATGGATACTGGCGCGACCACGCCAAGACCGCCGGCTACATCGTGCTCTACTCGCTCACCTTCTTCTCCGCCAACCT
CGGGCCCAACACCACCACCTTCATCCTGCCGGCGGAGCTCTTCCCGGCGCGCTTCCGGTCGACCTGCTACGGCCTGTCCG
GAGCGGCGGGGAAGCTCGGCGCGCTCGTCGGCTCCATCGGCTTCCTGTGGGCGTCGCAGCAGAAGGACGGCGCGGCGGCC
GGGCACCTGCCGGGCATCGGCATGATGTACGCGCTGTTCGTTCTTGGCGGGATCTGCCTGCTCGGGCTGGCGCTCACCTA
CGCGTTCACGCCGGAGACGATGACGCGGTCGCTGGAGGAGAACGAGAGCAGCGTGCAGGCGCAGAGCCAGGTCGGCGACG
GCGGCAGCGATGCCGGCAATGGCAGTGATGGGCTGCGCTTCCACGAACTAAATGTTCTCATGGAGGCGGCGACCAAGAGC
CCTGTGTCCATGGCGAGCTCGCACCTCAGCATGTCGCCTATCCTTCCGCACCGGATGTCTCTATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis