Browse Element(s) Details


OsAffx.27761.1.S1_at

Description tigr:9634.m02151
TID=OsAffx.27761.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2196011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21920Os.56001.1.S1_at11/116+12679639..12680852phosphate transporter family protein, putative, expressed
LOC_Os06g21930OsAffx.27760.1.S1_at10/116+12685485..12686679phosphate transporter family protein, putative
LOC_Os06g21940NANA6+12689957..12690373hypothetical protein
LOC_Os06g21950Os.56001.1.S1_at5/116+12691306..12693850major facilitator superfamily protein
LOC_Os06g21950OsAffx.27760.1.S1_at1/116+12691306..12693850major facilitator superfamily protein
LOC_Os06g21960OsAffx.27761.1.S1_at11/116+12699244..12700178hypothetical protein
LOC_Os06g21970Os.50472.1.S1_at1/116+12701745..12703363retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21980Os.4733.1.S1_at11/116+12707085..12712102Pantothenate kinase 4, putative, expressed
LOC_Os06g21990NANA6+12716547..12720183retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27761.1.S1_at--932--4451Chr06:12699579..12699603 (25 bp)
GCCTGCAACGCTGTGGTAACTGACA
LOC_Os06g21960
OsAffx.27761.1.S1_at--630--8651Chr06:12699590..12699614 (25 bp)
TGTGGTAACTGACAATAGCTGCCGC
LOC_Os06g21960
OsAffx.27761.1.S1_at--689--4131Chr06:12699627..12699651 (25 bp)
CGCTGCTTGTCCATAAATCTCCTCT
LOC_Os06g21960
OsAffx.27761.1.S1_at--664--8691Chr06:12699662..12699686 (25 bp)
TGTCTTTGCCGCCAAGCAAGTCAAA
LOC_Os06g21960
OsAffx.27761.1.S1_at--898--1471Chr06:12699676..12699700 (25 bp)
AGCAAGTCAAAGTGCCGGCGGCTAC
LOC_Os06g21960
OsAffx.27761.1.S1_at--1018--3451Chr06:12699710..12699734 (25 bp)
CAGTGGTCTACCCTTGCGAGGACAT
LOC_Os06g21960
OsAffx.27761.1.S1_at--433--9151Chr06:12699724..12699748 (25 bp)
TGCGAGGACATCACGCGCGGCACTA
LOC_Os06g21960
OsAffx.27761.1.S1_at--32--7771Chr06:12699782..12699806 (25 bp)
GGTGAAACTCATTCGCACAAAGCTT
LOC_Os06g21960
OsAffx.27761.1.S1_at--1129--3291Chr06:12699797..12699821 (25 bp)
CACAAAGCTTGTGCCGGTGCTCATC
LOC_Os06g21960
OsAffx.27761.1.S1_at--114--6511Chr06:12699933..12699957 (25 bp)
GATAGGATTGTCACCGTTGTTGCAT
LOC_Os06g21960
OsAffx.27761.1.S1_at--1019--591Chr06:12699964..12699988 (25 bp)
ATGCCGGGTGCACCAGCAATTCAAT
LOC_Os06g21960
Target Sequence 
GCCTGCAACGCTGTGGTAACTGACAATAGCTGCCGCCTCCACCGCCGCCGCTGCTTGTCCATAAATCTCCTCTCCTCCCA
CAATGTCTTTGCCGCCAAGCAAGTCAAAGTGCCGGCGGCTACTCGCTCTGCCAGTGGTCTACCCTTGCGAGGACATCACG
CGCGGCACTACTGCTCGCCTCGCTGCTCTCCCTCGGCAAAATGGGTGAAACTCATTCGCACAAAGCTTGTGCCGGTGCTC
ATCAAGTTGCTCGACCTCGCCTTCCTTCATGTACGCCTCGCCATGGGCCTCCACATCCGTGCGCCACTCGGCAGCAGGAG
AGGAGGGGAAGAGAGTGGGAAGATAGGAAGAAGAGATAGGATTGTCACCGTTGTTGCATCGGCTGATGCCGGGTGCACCA
GCAATTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis