Browse Element(s) Details


Os.4733.1.S1_at

Description gb:AK063974.1
DB_XREF= gi:32973992
TID=Os.4733.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4733 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-B09, full insert sequence.
FL= gb:AK063974.1 gb:AK099286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2198011/11Pantothenate kinase 4, putative, expressed
LOC_Os05g410601/11ADP-ribosylation factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21930OsAffx.27760.1.S1_at10/116+12685485..12686679phosphate transporter family protein, putative
LOC_Os06g21940NANA6+12689957..12690373hypothetical protein
LOC_Os06g21950Os.56001.1.S1_at5/116+12691306..12693850major facilitator superfamily protein
LOC_Os06g21950OsAffx.27760.1.S1_at1/116+12691306..12693850major facilitator superfamily protein
LOC_Os06g21960OsAffx.27761.1.S1_at11/116+12699244..12700178hypothetical protein
LOC_Os06g21970Os.50472.1.S1_at1/116+12701745..12703363retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21980Os.4733.1.S1_at11/116+12707085..12712102Pantothenate kinase 4, putative, expressed
LOC_Os06g21990NANA6+12716547..12720183retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0004594molecular_functionpantothenate kinase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4733.1.S1_at--973--2491Chr06:12711549..12711573 (25 bp)
AACATCCTGAAGTGGCGCAATTTTT
LOC_Os06g21980
Os.4733.1.S1_at--663--8011Chr06:12711579..12711603 (25 bp)
GGAGGCTTTATGATTGCGTCTTCAA
LOC_Os06g21980
Os.4733.1.S1_at--943--612Chr06:12711642..12711666 (25 bp)
ATGCGGTTGCTTTATTTCGTTTTCA
LOC_Os06g21980
Os.4733.1.S1_at--385--4031Chr06:12711659..12711683 (25 bp)
CGTTTTCAACTGGTGCGAGGCTACA
LOC_Os06g21980
Os.4733.1.S1_at--1015--8971Chr06:12711685..12711709 (25 bp)
TGAACATATCACATGTGCTCGTCCC
LOC_Os06g21980
Os.4733.1.S1_at--13--3331Chr06:12711790..12711814 (25 bp)
CACTACGTGCCTTTTCATCTAGGTA
LOC_Os06g21980
Os.4733.1.S1_at--104--6991Chr06:12711882..12711906 (25 bp)
GTACCTCCGTGTTTTATCATGTTAT
LOC_Os06g21980
Os.4733.1.S1_at--270--10791Chr06:12711923..12711947 (25 bp)
TTGATACCGGTTCTGCTTCTGATAA
LOC_Os06g21980
Os.4733.1.S1_at--1035--10171Chr06:12711980..12712004 (25 bp)
TATACTAGCCTAACTACTTCGCAGA
LOC_Os06g21980
Os.4733.1.S1_at--435--10071Chr06:12712017..12712041 (25 bp)
TAGTGTAGCCTTTACTTCGGATTTG
LOC_Os06g21980
Os.4733.1.S1_at--682--2491Chr06:12712061..12712085 (25 bp)
AACAGATTGCGTGGTTGCTGCCAAA
LOC_Os06g21980
Target Sequence 
AACATCCTGAAGTGGCGCAATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGATA
ACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGAACATATCACATGTGCTCGTCC
CTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGGCATTTTTAGGGAATGCAATTACGGAACTTTTAATTCGTATT
GCACTACGTGCCTTTTCATCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCGATTCAGATTAATAATAA
CAGTTCAACTAAAGTACCTCCGTGTTTTATCATGTTATTTAATTCGAACATTGTTTGATACCGGTTCTGCTTCTGATAAA
AGTGCCATTGAAGATCAGTTGTGTTCTGTATTATACTAGCCTAACTACTTCGCAGAAAAATGGGTGTATAGTGTAGCCTT
TACTTCGGATTTGGGAAGAAGATGAATTTTGTAACAGATTGCGTGGTTGCTGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis