Browse Element(s) Details


OsAffx.27760.1.S1_at

Description tigr:9634.m02148
TID=OsAffx.27760.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to phosphate transporter JX17
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2193010/11phosphate transporter family protein, putative
LOC_Os06g219501/11major facilitator superfamily protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21910Os.49639.1.S1_at11/116+12664606..12665204Late embryogenesis abundant group 1 family protein, expressed
LOC_Os06g21920Os.56001.1.S1_at11/116+12679639..12680852phosphate transporter family protein, putative, expressed
LOC_Os06g21930OsAffx.27760.1.S1_at10/116+12685485..12686679phosphate transporter family protein, putative
LOC_Os06g21940NANA6+12689957..12690373hypothetical protein
LOC_Os06g21950Os.56001.1.S1_at5/116+12691306..12693850major facilitator superfamily protein
LOC_Os06g21950OsAffx.27760.1.S1_at1/116+12691306..12693850major facilitator superfamily protein
LOC_Os06g21960OsAffx.27761.1.S1_at11/116+12699244..12700178hypothetical protein
LOC_Os06g21970Os.50472.1.S1_at1/116+12701745..12703363retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21980Os.4733.1.S1_at11/116+12707085..12712102Pantothenate kinase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27760.1.S1_at--1099--6372Chr06:12685515..12685539 (25 bp)
GATCCCAAGAACAAATTCATCCTTA
LOC_Os06g21930
OsAffx.27760.1.S1_at--768--112Chr06:12685529..12685553 (25 bp)
ATTCATCCTTAACACCATCATTTCG
LOC_Os06g21930
OsAffx.27760.1.S1_at--869--9811Chr06:12685538..12685562 (25 bp)
TAACACCATCATTTCGGAGTTCGCC
LOC_Os06g21930
OsAffx.27760.1.S1_at--1125--411Chr06:12685545..12685569 (25 bp)
ATCATTTCGGAGTTCGCCAACCGGC
LOC_Os06g21930
OsAffx.27760.1.S1_at--599--3791Chr06:12685716..12685740 (25 bp)
CTCGCCTGGCGAATCATACTCATGG
LOC_Os06g21930
OsAffx.27760.1.S1_at--303--8392Chr06:12685723..12685747 (25 bp)
GGCGAATCATACTCATGGCCGGCGC
LOC_Os06g21930
OsAffx.27760.1.S1_at--791--9173Chr06:12685754..12685778 (25 bp)
TGCCGCGCTGACGTACTACTGGAGG
LOC_Os06g21930
OsAffx.27760.1.S1_at--1035--4731Chr06:12685760..12685784 (25 bp)
GCTGACGTACTACTGGAGGATGCCC
LOC_Os06g21930
OsAffx.27760.1.S1_at--354--611Chr06:12685779..12685803 (25 bp)
ATGCCCATGCCGGAGACAGCCAGGT
LOC_Os06g21930
OsAffx.27760.1.S1_at--929--4332Chr06:12679076..12679100 (25 bp)
CCATGCCGGAGACAGCCAGGTATAC
NONE
OsAffx.27760.1.S1_at--742--3951NONE
CGGAGACAGCCAGGTATACGGCGCT
NONE
Target Sequence 
GATCCCAAGAACAAATTCATCCTTAACACCATCATTTCGGAGTTCGCCAACCGGCGCACCCGCGGCGCGTTCATCGCCGC
CGTGTTCTCCATGCAGGGGTTCGGCATCCTCGTCAGCTCCGCCGTCACCATGGCCGTCGCCGCCGCCTTCGACCACTACG
CCGGCCACCCCGCGCCGCTCGACACGCCGGAGTGCGCCGACCTCGCCTGGCGAATCATACTCATGGCCGGCGCCGTCCCT
GCCGCGCTGACGTACTACTGGAGGATGCCCATGCCGGAGACAGCCAGGTATACGGCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis