Browse Element(s) Details


OsAffx.15545.1.S1_at

Description tigr:9634.m02143
TID=OsAffx.15545.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2188011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21850NANA6+12622231..12623750hypothetical protein
LOC_Os06g21860Os.2741.4.S1_x_at6/116+12625526..12628188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21870OsAffx.27758.1.S1_at11/116+12631336..12631924hypothetical protein
LOC_Os06g21880OsAffx.15545.1.S1_at11/116+12644826..12647128hypothetical protein
LOC_Os06g21880Os.55031.1.S1_at1/116+12644826..12647128hypothetical protein
LOC_Os06g21890Os.56207.1.A1_x_at11/116+12650281..12651637expressed protein
LOC_Os06g21890Os.56207.1.A1_at11/116+12650281..12651637expressed protein
LOC_Os06g21900OsAffx.27759.1.S1_at11/116+12654635..12659294NA
LOC_Os06g21900OsAffx.27759.1.S1_x_at11/116+12654635..12659294NA
LOC_Os06g21900OsAffx.21788.2.S1_x_at1/116+12654635..12659294NA
LOC_Os06g21900OsAffx.24785.1.S1_x_at1/116+12654635..12659294NA
LOC_Os06g21910Os.49639.1.S1_at11/116+12664606..12665204Late embryogenesis abundant group 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15545.1.S1_at--636--2192Chr06:16297742..16297766 (25 bp)
ACAAATGCAATCGTGGCTCCATCTA
NONE
OsAffx.15545.1.S1_at--195--1731Chr06:12647021..12647045 (25 bp)
ACCATGGTTCTTAACCGATCCTCAC
LOC_Os06g21880
OsAffx.15545.1.S1_at--770--3191Chr06:12646993..12647017 (25 bp)
CAATGCCTCTCTCCTAATGAGACAG
LOC_Os06g21880
OsAffx.15545.1.S1_at--757--6211Chr06:12645019..12645043 (25 bp)
GAGGCTGTTGGAATCGCAACCTCTT
LOC_Os06g21880
OsAffx.15545.1.S1_at--648--5151Chr06:12645004..12645028 (25 bp)
GCAACCTCTTGTCTTGGCGCTAAGC
LOC_Os06g21880
OsAffx.15545.1.S1_at--489--8391Chr06:12644989..12645013 (25 bp)
GGCGCTAAGCCATGGATTCTGTCTT
LOC_Os06g21880
OsAffx.15545.1.S1_at--657--3871Chr06:12644971..12644995 (25 bp)
CTGTCTTTCGTGGTTGAAACTCCAA
LOC_Os06g21880
OsAffx.15545.1.S1_at--1050--2351Chr06:12644955..12644979 (25 bp)
AAACTCCAAGTTTATCGAAGATGTC
LOC_Os06g21880
OsAffx.15545.1.S1_at--725--6271Chr06:12644910..12644960 (25 bp)
GATGTCATCAACTCAGTTTGCGCTA
LOC_Os06g21880
OsAffx.15545.1.S1_at--538--6851Chr06:12644895..12644919 (25 bp)
GTTTGCGCTAGCCATGGTCTTCTTC
LOC_Os06g21880
OsAffx.15545.1.S1_at--196--10571Chr06:12644876..12644900 (25 bp)
TTCTTCTCTAGCGATACATTCACAA
LOC_Os06g21880
Target Sequence 
ACAAATGCAATCGTGGCTCCATCTACCAGCATGCCATCCCACCATGGTTCTTAACCGATCCTCACCACCAATGCCTCTCT
CCTAATGAGACAGAAAGCAGCAATCAAGAACAACGAGTGCAAGAGGCTGTTGGAATCGCAACCTCTTGTCTTGGCGCTAA
GCCATGGATTCTGTCTTTCGTGGTTGAAACTCCAAGTTTATCGAAGATGTCATCAACTCAGTTTGCGCTAGCCATGGTCT
TCTTCTCTAGCGATACATTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis