Browse Element(s) Details


OsAffx.12554.1.S1_at

Description tigr:9630.m04745
TID=OsAffx.12554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4864011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48620Os.15634.1.S2_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620Os.15634.1.S1_at11/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48620OsAffx.9334.1.S1_at1/112+29757751..29769127tetratricopeptide repeat, putative, expressed
LOC_Os02g48630Os.8768.1.S1_a_at11/112+29777479..29780221expressed protein
LOC_Os02g48640OsAffx.12554.1.S1_at11/112+29780577..29783793expressed protein
LOC_Os02g48650Os.51563.1.S1_at5/112+29786994..29787494acetyltransferase, GNAT family protein
LOC_Os02g48660Os.4746.1.S1_a_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48660Os.4746.2.S1_x_at11/112+29789581..2979136760S ribosomal protein L31, putative, expressed
LOC_Os02g48670Os.6386.1.S1_at10/112+29793611..29794710MSF1-like conserved region family protein, expressed
LOC_Os02g48680Os.20168.1.S1_at11/112+29794850..29795810expressed protein
LOC_Os02g48680OsAffx.24787.1.S1_at1/112+29794850..29795810expressed protein
LOC_Os02g48690OsAffx.3000.1.S1_at11/112+29799417..29802234expressed protein
LOC_Os02g48700OsAffx.24788.1.S1_at11/112+29803773..29804156hypothetical protein
LOC_Os02g48710NANA2+29807417..29807626expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12554.1.S1_at--493--9151Chr02:29781091..29781115 (25 bp)
TGCGCGACCTCTACCGGGAGGCGAA
LOC_Os02g48640
OsAffx.12554.1.S1_at--112--7411Chr02:29781047..29781071 (25 bp)
GTGATCTCCAGGGTGTCCGGGCAAA
LOC_Os02g48640
OsAffx.12554.1.S1_at--243--451Chr02:29781044..29781068 (25 bp)
ATCTCCAGGGTGTCCGGGCAAAAGG
LOC_Os02g48640
OsAffx.12554.1.S1_at--238--8191Chr02:29781028..29781052 (25 bp)
GGCAAAAGGTCCTCCCGTGGATGGT
LOC_Os02g48640
OsAffx.12554.1.S1_at--1019--8551Chr02:29781011..29781035 (25 bp)
TGGATGGTGTCCACGTCGGGCGCCA
LOC_Os02g48640
OsAffx.12554.1.S1_at--1054--3991Chr02:29780998..29781022 (25 bp)
CGTCGGGCGCCATCCGGTGCTTCGA
LOC_Os02g48640
OsAffx.12554.1.S1_at--702--3611Chr02:29780810..29780834 (25 bp)
CTTGTGCGGCAGGACTCGTTCGGCG
LOC_Os02g48640
OsAffx.12554.1.S1_at--464--1931Chr02:29780772..29780796 (25 bp)
ACGGCAGGACTCGTTCGCCATAGGC
LOC_Os02g48640
OsAffx.12554.1.S1_at--1118--5691Chr02:29780765..29780789 (25 bp)
GACTCGTTCGCCATAGGCGAGCTGC
LOC_Os02g48640
OsAffx.12554.1.S1_at--399--8351Chr02:29780740..29780764 (25 bp)
GGCGGCAGGGCTCGTATGGCGTCGA
LOC_Os02g48640
OsAffx.12554.1.S1_at--1153--6191Chr02:29780679..29780703 (25 bp)
GAGGCAGGACTCGTTCGCGTGCACC
LOC_Os02g48640
Target Sequence 
TGCGCGACCTCTACCGGGAGGCGAAGCGCGCGTCGAAGCTGCTGGTGATCTCCAGGGTGTCCGGGCAAAAGGTCCTCCCG
TGGATGGTGTCCACGTCGGGCGCCATCCGGTGCTTCGACACCGTCTCGCTCAGCCAGAAGCTGTCGCTGCACCGGCACGC
CCTGCGCCCGATCCTGCTCCACCTGCTCATGTGGGAAGGCAAGTCGGCCGACGCGCCGGCTCGCCCGCACGAGCCCCGCC
TGCCGCCTCAGCCGGCGCCGTACCCGGAGTTCGCCGCCGGCCTTGTGCGGCAGGACTCGTTCGGCGGCGGCGAGCTGCCA
CGGCAGGACTCGTTCGCCATAGGCGAGCTGCGGCGGCAGGGCTCGTATGGCGTCGAGCTGGTGCGGCAGGACTCGTTCGG
CGTCGAGCTGGTGAGGCAGGACTCGTTCGCGTGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis